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Job DescriptionP75853
Confidence97.86%DateThu Jan 5 12:15:02 GMT 2012
Rank80Aligned Residues202
% Identity15%Templatec2rc9A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60..... ....70.........80.........90.........100......
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Query Sequence  SIGMVLAKSHQLLEKRYPESKISWVEFPA. . . . . . . . . . GPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPP
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Template Sequence  CYGYCIDLLEQLAED. . MNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTS. FSINTARSQVIDFT. . . . SPF
Template Known Secondary structure  S..T
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   68.70.........80.. .......90.........100.........110.........120... ......130....... ..140
 
   107..110.........120 .........130.........140.........150.........160.........170.......
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Query Sequence  KPKAEVILVAENSP. . . . . . . IKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNV. .
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Template Sequence  FSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRY. . NVPATPDGVQYLKNDPEKL
Template Known Secondary structure  TTS



STT
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   141........150.........160.........170.........180.........190......... 200.........210........
 
   178.180.........190...... ...200.........210.........220.........230.........240.........250......
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Query Sequence  DAWAIWDPYYSAALLQGGV. RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG
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Template Sequence  DAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLP. . . . PNSP. . . . . LTSNISELISQYKSH. GFMDVLHDKWYK
Template Known Secondary structure  S
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   219220.........230.........240.........250....... ..260. ........270...... ...280........
 
   257
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Query Sequence  L
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Template Sequence  V
Template Known Secondary structure 
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   289
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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