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Job DescriptionP75853
Confidence94.27%DateThu Jan 5 12:15:02 GMT 2012
Rank136Aligned Residues205
% Identity14%Templatec2qryD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30......... 40.........50.........60.........70... ......80.........90.........
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Query Sequence  PEALRIGYQKGSIG. . MVLAKSHQLLEKRYPESKISWVEFPAGPQMLEAL. . . . NVGSIDLGSTGDIPPIFAQAAGADLV
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Template Sequence  KPVLTVYTYDSFAADWGPGPVVKKAFEADC. NCELKLVALEDGVSLLNRLRXEGKNSKADVVLGLDNNLLDAASKTGLFA
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STTSSSS.
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SGGGTTT
B
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   1920.........30.........40........ .50.........60.........70.........80.........90.......
 
   100. ........110........ .120....... ..130.........140.........150.....
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Query Sequence  YV. . . . . . . . . . . . . . . . GVEPPKPKAEVILVAEN. . . SPIKTVADL. . . . . KGHKVAFQKGSSSHNLLLRALRQAGLKF
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Template Sequence  KSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWXQKVYGD
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   98.100.........110.........120.........130.........140.........150.........160.........170.......
 
   156...160.........170.........180.........190.... .....200.........210.........220..
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Query Sequence  . . . . . . . . . . TDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG. . . GVRVLKDGTDLNQTGSFYLAARPYAEKN
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Template Sequence  DAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA. . SKQ
Template Known Secondary structure  GTTSSTTS
STT






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   178.180.........190.........200.........210.........220.........230.........240.........250.. ...
 
   223......230...
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Query Sequence  GAFIQGVLATF
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Template Sequence  PELAQKFLQFX
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   256...260......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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