Job Description P75853 Confidence 98.71% Date Thu Jan 5 12:15:02 GMT 2012 Rank 48 Aligned Residues 221 % Identity 15% Template c2q2aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus Resolution 1.79 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	A	V	A	A	E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	.	.	.	.	.	.	.	.	.	.	.	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.											.	.											.
Template Conservation																																																.	.											.
Template Sequence		S	S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	.	.	A	G	L	D	Y	E	L	K	N	I	.	G	W	D	P	L	F	A	S	L	Q	S	K	E	V	D	M	G	I	S	G	I
Template Known Secondary structure			T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													.	.	T	T									.												T	S	S					S	S
Template Predicted Secondary structure																																																.	.											.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P
Query Conservation
Alig confidence												.	.	.	.	.																																																.	.	.	.	.
Template Conservation												.	.	.	.	.																																																.	.	.	.	.
Template Sequence		T	I	T	D	E	R	K	Q	S	Y	.	.	.	.	.	D	F	S	D	P	Y	F	E	A	T	Q	V	I	L	V	K	Q	G	S	P	V	K	N	A	L	D	L	K	G	K	T	I	G	V	Q	N	A	T	T	G	Q	E	A	A	E	K	L	.	.	.	.	.	F	G	K	G	P	H	I	K	K	F	E	T	T
Template Known Secondary structure		B							T	T		.	.	.	.	.				S													T	T					S	G	G	G	G	T	T	S						T	T	S										.	.	.	.	.			S	S	T	T					S	S
Template Predicted Secondary structure												.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	.	.	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q
Query Conservation																															.	.
Alig confidence																															.	.																						.	.	.	.																					.	.	.	.
Template Conservation																																																						.	.	.	.																					.	.	.	.
Template Sequence		V	V	A	I	M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A	V	A	N	E	Y	V	K	N	N	P	N	K	K	L	Q	V	I	E	D	P	K	N	F	A	S	E	Y	Y	G	M	I	F	.	.	.	.	P	K	N	S	E	L	K	A	K	V	D	E	A	L	K	N	V	I	N	S	.	.	.	.
Template Known Secondary structure										T	T	S	S	S																	G	G	G								T	T	T	S										.	.	.	.		T	T		T																.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.																					.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	S	I	A	L	L	A	K	T	M	G	L	P	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	K	Y	T	E	I	Y	K	K	W	F	G	K	E	P
Template Known Secondary structure		.	T											S	S
Template Predicted Secondary structure		.
Template SS confidence
			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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