Job Description P75853 Confidence 98.99% Date Thu Jan 5 12:15:02 GMT 2012 Rank 37 Aligned Residues 216 % Identity 17% Template c2pfyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.95 Å

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		26	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																			.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																																			.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Query Sequence		P	E	A	L	R	I	G	.	.	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	.	.	.	.	.	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	.	.	.	.	.	.	.	.	.
Query Conservation									.	.																																			.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Alig confidence									.	.																																			.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	S	W	T	X	T	A	E	Q	P	D	A	N	Y	L	T	Q	N	A	R	Q	F	A	D	E	V	K	A	A	T	A	G	A	L	E	I	K	V	Q	S	N	S	T	L	L	K	R	P	E	V	K	R	G	V	Q	Q	G	V	V	Q	I	G	E	V	L	V	S	A	L	G	N	E	D	P	L	F	E	I	D
Template Known Secondary structure										S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S						G	G	G	G	T	T	T		G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																											.	.	.
Template Conservation																																																	.	.	.	.																											.	.	.
Template Sequence		S	V	P	F	L	A	S	S	F	N	E	S	E	K	L	W	K	A	T	R	P	L	L	A	Q	R	L	D	K	Q	G	I	V	L	V	Y	G	S	P	W	P	P	Q	G	I	Y	T	.	.	.	.	K	K	P	V	A	A	L	A	D	L	K	G	T	R	F	R	A	Y	S	A	S	T	S	H	X	A	.	.	.
Template Known Secondary structure		G	S	T	T	T	S		S																					T	T	T																	.	.	.	.	S	S			S	S	G	G	G	G	T	T							S								.	.	.
Template Predicted Secondary structure																																																	.	.	.	.																											.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	L	X	G	A	V	P	T	T	V	Q	T	P	E	V	P	Q	A	F	S	T	G	V	I	D	A	X	L	T	S	P	A	T	G	V	D	S	Q	A	W	D	Y	V	K	Y	Y	Y	D	A	Q	A	F	I	P	Q	S	F	V	I	A	N	K	R	A	F	Q	R	L	P	A	E	V	R
Template Known Secondary structure		.	.	.	.	.	.	.			T	T	S							G	G	G							T	T	S		S	B											T	T	G	G	G	T																										S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	V	L	D	A	G	A	K	A	E	I	R	G	W	Q	T	A	R	A	K	T	R	E	L	T	D	T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions