Job Description P75853 Confidence 98.52% Date Thu Jan 5 12:15:02 GMT 2012 Rank 53 Aligned Residues 212 % Identity 13% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.												.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	.	.	.	.	.	.	.	.	.	.	.	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																						.
Template Sequence		K	V	Q	T	I	T	V	G	T	G	T	Q	F	P	N	I	C	F	I	D	E	K	G	D	L	T	G	Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	F	.	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K
Template Known Secondary structure												S			T	T	T					T	T	S				S														T	T										G	.	G	G						G	G	G	S		S				S
Template Predicted Secondary structure																																																						.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q
Query Conservation
Alig confidence																.	.	.																																					.	.	.	.	.	.	.
Template Conservation																.	.	.																																					.	.	.	.	.	.	.
Template Sequence		K	F	L	F	N	K	V	A	Y	N	H	F	P	L	.	.	.	K	I	T	V	L	Q	N	N	D	T	I	R	G	I	E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	.	.	.	.	.	.	.	D	N	G	R	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K
Template Known Secondary structure							S	S								.	.	.						T	T			S		S	S	G	G	G		T	T																	T	.	.	.	.	.	.	.	T	T	T			S
Template Predicted Secondary structure																.	.	.																																					.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K
Query Conservation
Alig confidence																																												.	.	.	.						.	.	.	.																.
Template Conservation																																												.	.	.	.						.	.	.	.																.
Template Sequence		S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	Y	F	X	F	N	.	.	.	.	K	N	E	Q	T	.	.	.	.	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D	.	G	T	L	K	R	L	S	L	K
Template Known Secondary structure			S	S		S																	S	S																				.	.	.	.	G	G	G			.	.	.	.															T	.	T
Template Predicted Secondary structure																																												.	.	.	.						.	.	.	.																.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.
		254	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	G
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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