Job Description P75853 Confidence 97.85% Date Thu Jan 5 12:15:02 GMT 2012 Rank 81 Aligned Residues 210 % Identity 13% Template c2ieeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. Resolution 2.20 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	.	.	.	.	.	.	.	.	.	.	.	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.											.	.													.																											.
Template Conservation																																								.	.													.																											.
Template Sequence		D	K	G	K	I	V	V	A	T	S	G	T	L	Y	P	T	S	Y	H	D	T	D	K	L	T	G	Y	E	V	E	V	V	R	E	A	A	K	R	.	.	L	G	L	K	V	E	F	K	E	X	G	I	.	D	G	X	L	T	A	V	N	S	G	Q	V	D	A	A	A	N	D	I	D	V	T	K	D	R	E	.
Template Known Secondary structure				T								S		B	T	T	T	B									S												T	.	.	T	T										S	.	T	T							T	T	S	S	S				S	S		B							.
Template Predicted Secondary structure																																								.	.													.																											.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q
Query Conservation
Alig confidence		.	.																																																				.	.	.	.	.	.	.
Template Conservation		.	.																																																				.	.	.	.	.	.	.
Template Sequence		.	.	E	K	F	A	F	S	T	P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D	D	L	S	G	I	K	T	L	K	D	L	K	G	K	K	A	A	G	A	T	T	V	Y	X	E	V	A	R	K	Y	.	.	.	.	.	.	.	G	A	K	E	V	I	Y	D	N	A	T	N	E	Q	Y	L	K	D	V	A
Template Known Secondary structure		.	.	T	T							S											T	T	T	G	G	G		S	S	G	G	G	G	T	T								S									T	.	.	.	.	.	.	.	T							S	S
Template Predicted Secondary structure		.	.																																																				.	.	.	.	.	.	.
Template SS confidence
				99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	.	.	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L
Query Conservation																							.	.
Alig confidence																							.	.																						.	.	.	.						.	.	.	.																		.
Template Conservation																																														.	.	.	.						.	.	.	.																		.
Template Sequence		N	G	R	T	D	V	I	L	N	D	Y	Y	L	Q	T	L	A	L	A	A	F	P	D	L	N	I	T	I	H	P	D	I	K	Y	X	P	N	K	Q	A	L	V	X	K	.	.	.	.	K	S	N	A	A	.	.	.	.	L	Q	K	K	X	N	E	A	L	K	E	X	S	K	D	G	S	.	L	T	K	L	S
Template Known Secondary structure		T	T	S																			T	T	S	S					S	S														.	.	.	.	T	T				.	.	.	.															T	T		.
Template Predicted Secondary structure																																														.	.	.	.						.	.	.	.																		.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.
		252	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	F	F	N
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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