Job Description P75853 Confidence 100.00% Date Thu Jan 5 12:15:02 GMT 2012 Rank 11 Aligned Residues 283 % Identity 13% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																.	.																							.																					.	.	.	.															.	.	.
Query SS confidence																.	.																							.																					.	.	.	.															.	.	.
Query Sequence		A	E	S	S	P	E	A	L	R	I	G	Y	Q	K	.	.	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	.	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	.	.	.	.	I	D	L	G	S	T	G	D	I	P	P	I	F	A	.	.	.
Query Conservation																.	.																							.																					.	.	.	.															.	.	.
Alig confidence																.	.																		.	.				.																					.	.	.	.															.	.	.
Template Conservation																																			.	.
Template Sequence		M	M	P	E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	.	.	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G
Template Known Secondary structure		S	S		S		S								S	S	G	G	G									T	T					T	.	.	T		T								S	S												T	T	T	T	S		S						T	T							T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
					92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		.	.	.	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	.	.	.	.	.	.	.	.	.	.	.	.	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	.	.	.	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L
Query Conservation		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		I	I	T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V
Template Known Secondary structure		T	T	T	T	T													B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		154	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure						.																																															.	.
Query SS confidence						.																																															.	.
Query Sequence		K	F	T	D	.	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	.	.	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L
Query Conservation						.																																															.	.
Alig confidence						.																																															.	.
Template Conservation
Template Sequence		D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	L
Template Known Secondary structure			T	T	T	T	S																	T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		231	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure														.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	F	S	E	A	D	A	L	T	R	S	.	.	Q	R	E	Q	S	I	A	L	L	A	.	.	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q
Query Conservation														.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	I	M	E	A	Q	Q	W	I	D	D	P	K	N	R	P	E	V	V	Q	I	V	S	G	R	N	Y	F	N	V	P	T	T	I	L	E	S	P	F	K	G	Q	Y	T	M	G	D	G	Q	P	A	I	D	D	F	Q	K	G	P	L	Y	W	K	D	G	I	G	N	V	S	Y	P	Y	K	S	H	D	L	W
Template Known Secondary structure													S	G	G	G										S	T	T	T	T		S		T					T	G	G	G	T					B	T	T	B						G	G	G	S		B	S	S	B		S	S	S	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	L	F	Y	E	N	R	L	V	P	K	K	V	D	I	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	T	E	S	I	R	W	G	F	H	K	N	A	I	P	D	L	D
Template Known Secondary structure									T	T	T	T	T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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