Job Description P75853 Confidence 98.75% Date Thu Jan 5 12:15:02 GMT 2012 Rank 46 Aligned Residues 228 % Identity 18% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

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		26	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																	.	.																	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence											.																	.	.																	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		P	E	A	L	R	I	G	Y	Q	.	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	.	.	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	.	.	.	.	.	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	.	.	.	.	.	.	.	.
Query Conservation											.																	.	.																	.	.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence											.																	.	.																	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	T	W	R	L	A	S	S	F	P	K	S	L	D	T	I	F	G	G	A	E	V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A	L
Template Known Secondary structure										S	S		T	T	S																	T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
																												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																					.	.	.	.	.	.
Template Conservation																																																				.	.	.																					.	.	.	.	.	.
Template Sequence		A	A	A	V	P	F	S	L	S	A	R	G	I	N	A	W	H	Y	H	G	G	G	I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	X	G	G	W	.	.	.	F	R	R	E	I	N	T	V	A	D	X	Q	G	L	K	X	R	V	G	G	.	.	.	.	.	.	F
Template Known Secondary structure		T	T			T	T														S	S										G	G	G	T											S	B					.	.	.		S	S				S	S	G	G	G	T	T								.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.																					.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	.	.	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K
Query Conservation																																													.	.
Alig confidence														.	.	.	.	.																											.	.
Template Conservation														.	.	.	.	.
Template Sequence		A	G	K	V	X	E	R	L	G	V	V	P	.	.	.	.	.	Q	Q	I	A	G	G	D	I	Y	P	A	L	E	K	G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	K	L	G	F	F	K	V	A	P	Y	Y	Y	Y	P	G	W	W	E	G	G	P	T	V	H	F	X	F	N	K	S	A	Y	E	G
Template Known Secondary structure								T	T	T				.	.	.	.	.					G	G	G								T	S		S												T	T	T	G	G	G	T								B	T	T		S	S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																								.	.	.	.
Query SS confidence												.	.	.	.	.																								.	.	.	.
Query Sequence		N	G	A	F	I	Q	G	V	L	A	.	.	.	.	.	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	.	.	.	.	M	G	L	P	A	P	V	I	A	S	Y	L	D
Query Conservation												.	.	.	.	.																								.	.	.	.
Alig confidence												.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence		L	T	P	T	Y	Q	S	L	L	R	T	A	C	H	A	A	D	A	N	X	L	Q	L	Y	D	W	K	N	P	T	A	I	K	S	L	V	A	Q	G	T	Q	L	R	P	F	S	P	E	I	L	Q	A	C	F	E
Template Known Secondary structure		S																																					T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions