Job Description P75853 Confidence 100.00% Date Thu Jan 5 12:15:02 GMT 2012 Rank 10 Aligned Residues 285 % Identity 13% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																.	.																						.																			.	.	.	.																			.	.
Query SS confidence																.	.																						.																			.	.	.	.																			.	.
Query Sequence		A	E	S	S	P	E	A	L	R	I	G	Y	Q	K	.	.	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	.	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	.	.	.	.	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	.	.
Query Conservation																.	.																						.																			.	.	.	.																			.	.
Alig confidence																.	.																		.	.			.																			.	.	.	.																			.	.
Template Conservation																																			.	.
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	.	.	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G
Template Known Secondary structure					S		S								S	S	G	G	G									T	T					T	.	.	T		T	T							S													G	G	G	T	S		S						T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.	.																			.																				.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.																			.																				.
Query Sequence		.	.	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	.	.	.	.	.	.	.	.	.	.	.	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	.	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	.	F	T	D
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.	.	.																			.																				.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.																			.																				.
Template Conservation
Template Sequence		T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D
Template Known Secondary structure		T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S													T	T			B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	.	.	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E
Template Known Secondary structure		B							G	G	G							T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		236	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.													.	.	.	.	.	290	.					.	.	.	.
Predicted Secondary structure									.	.											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence									.	.											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		A	D	A	L	T	R	S	.	.	Q	R	E	Q	S	I	A	L	L	A	.	.	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	Q	T	A	D	L	.	.	.	.	F	Y	E	N
Query Conservation									.	.											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence									.	.											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P	F	E	D	I	I	D	R	S	K	G	I	Y	N	F	G	N	G	Q	E	T	F	E	D	Q	E	I	M	Q	K	Y	W	V	D	N	A	S	Y	P	Y	K	S	H	D	Q	W	F	L	T	E	N	I	R	W
Template Known Secondary structure									G	G	G										S	T	T	T	T				G	G	G	T	T	T	G	G	G	T					S	T	T							T	T	S	S		B	S	S	G	G	G	T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	P	K	K	V	D	I	R	Q	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	L	P	A	S	T	D	T	K	A	I	V
Template Known Secondary structure		T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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