Job Description P75853 Confidence 98.91% Date Thu Jan 5 12:15:02 GMT 2012 Rank 41 Aligned Residues 253 % Identity 13% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																							.	.																																					.	.	.																	.	.
Query SS confidence																							.	.																																					.	.	.																	.	.
Query Sequence		E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	.	.	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	.	.	.	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	.	.
Query Conservation																							.	.																																					.	.	.																	.	.
Alig confidence																							.	.																																					.	.	.																	.	.
Template Conservation
Template Sequence		P	E	R	P	V	N	X	V	V	P	F	A	A	G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P
Template Known Secondary structure			S	S							S	S		T	T	S																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
							96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure		.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	.	.	.	.	.	.	.	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y
Query Conservation		.	.	.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.																			.	.	.	.	.	.	.	.																																		.
Template Conservation																			.	.																																																												.
Template Sequence		G	Y	E	P	Y	T	S	F	E	P	I	G	L	V	V	D	V	.	.	P	X	T	I	I	A	R	G	D	F	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L	G	V	N	L	L	T	I	P	.	Y
Template Known Secondary structure		S	S		T	T	T	S											.	.								T	T		S			S												G	G	G						S		T	T	S														T								.
Template Predicted Secondary structure																			.	.																																																												.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																					.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T	.	.	.	P
Template Known Secondary structure		S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T													T	T		.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	.	.	.	.	.	.	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R
Query Conservation																																		.	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	.	.	.	.	.	A	D	P	K	F	Q	E	R	X	K	Q	L	G	A	E	V	L	T	N	E	A	N	P	E	A	L	Q	A	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	Q	V	P	Q	W	A	E	L	F	K	K	A	G
Template Known Secondary structure																	.	.	.	.	.												T	T					G	G	G		S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		297	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	P	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	K	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions