Job Description P75853 Confidence 55.17% Date Thu Jan 5 12:15:02 GMT 2012 Rank 189 Aligned Residues 216 % Identity 6% Template c1yaeB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: structure of the kainate receptor subunit glur6 agonist binding domain2 complexed with domoic acid Resolution 3.11 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.																			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.													.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	.	.	.	.	.	.	.	.	.	.	.	.	A	G	P	Q	M	L	E	A	L	N
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.
Template Sequence		S	N	R	S	L	I	V	T	T	I	L	E	E	P	Y	V	L	F	K	K	S	D	K	P	L	Y	G	N	D	R	F	E	G	Y	C	I	D	L	L	R	E	L	S	T	I	L	.	.	G	F	T	Y	E	I	R	L	V	E	D	G	K	Y	G	A	Q	D	D	V	N	G	Q	W	N	G	M	V	R	E	L	I
Template Known Secondary structure		T	T										B	T	T	T	B						S	S				G	G	G	G			S														.	.										S	S						B		T	T	T			B		S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.
Query Sequence		V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	.	.	.	.	.	A	L	R
Query Conservation																																																																										.	.	.	.	.
Alig confidence																						.	.	.																																																		.	.	.	.	.
Template Conservation																						.	.	.
Template Sequence		D	H	K	A	D	L	A	V	A	P	L	A	I	T	Y	V	R	E	K	V	.	.	.	I	D	F	S	K	P	F	M	T	L	G	I	S	I	L	Y	R	K	P	N	I	D	S	A	D	D	L	A	K	Q	T	K	I	E	Y	G	A	V	E	D	G	A	T	M	T	F	F	K	K	S	K	I	S	T	Y	D	K
Template Known Secondary structure		T	T	S		S				S	S		B							T	T	.	.	.							S																S									S	S					B	T	T	S											S
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V
Query Conservation
Alig confidence																																																																				.	.	.	.	.				.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.				.	.	.	.	.
Template Sequence		M	W	A	F	M	S	S	R	R	Q	S	V	L	V	K	S	N	E	E	G	I	Q	R	V	L	T	S	D	Y	A	F	L	M	E	S	T	T	I	E	F	V	T	Q	R	N	C	N	L	T	Q	I	G	G	L	I	D	S	K	G	Y	G	V	G	T	P	M	.	.	.	.	.	G	S	P	.	.	.	.	.	Y
Template Known Secondary structure									T						B	S	S											S	S															T	T		T	T					S	S		S	S										S	.	.	.	.	.	S		S	.	.	.	.	.	S
Template Predicted Secondary structure																																																																				.	.	.	.	.				.	.	.	.	.
Template SS confidence
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770						.	.	.						.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	G
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		R	D	K	I	T	I	A	I	L	Q	L	Q	E	E	.	G	K	L	H	M	M	K	E	K	W	W	R
Template Known Secondary structure																.	T										S
Template Predicted Secondary structure																.
Template SS confidence
		775	.	.	.	.	780	.	.	.	.	.	.	.	.		.	790	.	.	.	.	.	.	.	.	.	800

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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