Job Description P75853 Confidence 95.73% Date Thu Jan 5 12:15:02 GMT 2012 Rank 125 Aligned Residues 223 % Identity 13% Template c1al3A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V
Query Conservation
Alig confidence																																												.																							.	.	.	.	.
Template Conservation																																												.																							.	.	.	.	.
Template Sequence		P	D	K	G	S	L	Y	V	A	T	T	H	T	Q	A	R	Y	A	L	P	G	V	I	K	G	F	I	E	R	Y	P	R	V	S	L	H	M	H	Q	G	S	P	.	T	Q	I	A	E	A	V	S	K	G	N	A	D	F	A	I	A	T	E	A	L	H	.	.	.	.	.	L	Y	D	D	L	V	M	L	P	C
Template Known Secondary structure																			T	S												T												.									T	T			S					S	S				.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																												.																							.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	.	.	.	.	.	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D
Query Conservation																	.	.	.	.	.
Alig confidence						.	.	.									.	.	.	.	.
Template Conservation						.	.	.
Template Sequence		Y	H	W	N	.	.	.	R	S	I	V	V	T	P	E	H	P	L	A	T	K	G	S	V	S	I	E	E	L	A	Q	Y	P	L	V	T	Y	T	F	G	F	T	G	R	S	E	L	D	T	A	F	N	R	A	G	L	T	P	R	I	V	F	T	A	T	D	A	D	V	I	K	T	Y	V	R	L	G	L	G	V
Template Known Secondary structure						.	.	.							T	T	S	T	T	T	T	T	S									T	S							T	T	S	T	T												T										S	S											T	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		164	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	.	.	.	.	.	.	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A
Query Conservation																																																									.	.	.	.	.	.
Alig confidence					.	.																																			.	.															.	.	.	.	.	.
Template Conservation					.	.																																			.	.
Template Sequence		G	V	I	.	.	A	S	M	A	V	D	P	V	S	D	P	D	L	V	K	L	D	A	N	G	I	F	S	H	S	T	T	K	I	G	F	R	R	S	.	.	T	F	L	R	S	Y	M	Y	D	F	I	Q	R	F	A	P	H	L	T	R	D	V	V	D	T	A	V	A	L	R	S	N	E	D	I	E	A	M	F
Template Known Secondary structure					.	.		G	G	G			T	T	T		T	T	S						B	T	T	B											T	T	.	.																T	T
Template Predicted Secondary structure					.	.																																			.	.
Template SS confidence
		241	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		253	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	M	G	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	I	K	L	P	E
Template Known Secondary structure				S				B
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions