 |
Job Description | P0ACZ4 | Confidence | 85.94% | Date | Thu Jan 5 11:19:30 GMT 2012 |
Rank | 233 | Aligned Residues | 50 |
% Identity | 22% | Template | c3iwfA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:transcription regulator rpir family; |
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
|
Resolution | 1.40 Å |
|
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | S | L | S | K | Q | E | I | S | V | M | R | Y | I | L | D | G | . |
. |
. |
. |
. |
. |
K | D | N | N | D | I | A | E | K | M | F | I | S | N | K | T | V | S | T | Y | K | S | R | L | M | E | K | L | E | C | K | S | L | M | D | L |
Query Conservation |   |
  |   |   |
|
|   |
|
|   |   |
|
|   |   |   |   |   |
| . | . | . | . | . | . |   |
|
|
|
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|   |
|   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |
|
|   |
|
|
|   | . | . | . | . |
|
|   |
|
|
|
|
|   |
|
|   |
|
|
Template Sequence |   |
Y | P | Y | F | T | K | N | E | K | K | I | A | Q | F | I | L | N | Y | P | H | K | V | V | N | X | T | S | Q | E | I | A | N | Q | L | E | T | S | S | T | S | I | I | . |
. |
. |
. |
R | L | S | K | K | V | T | P | G | G | F | N | E | L |
Template Known Secondary structure |   |
G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | S | T | T |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|