|   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | Q | R | N | R | R | W | V | L | A | S | R | P | H | G | A | P | V | P | E | N | F | R | L | E | E | D | D | V | A | T | P | G | E | G | Q | V | L | L | R | T | V | Y | L | S | L | D | P | Y | M | R | G | R | M | S | D | E | P | S | Y | S | P | P | V | D | I | G | G | V | M | V | G | G | T | V | S | R | V | V | E |
Query Conservation |   |
  |   |   |   |
|
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |
|   |
|   |   |   |
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |
|
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|   |   |   | . |   |
|   |
| . | . | . | . | . |
|   |
|   |
|
|
|   |
|   |
|   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
|   |   | . | . |
|
|
Template Sequence |   |
D | I | T | C | K | A | A | V | A | W | E | . |
P | H | K | P | . |
. |
. |
. |
. |
L | S | L | E | T | I | T | V | A | P | P | K | A | H | E | V | R | I | K | I | L | A | S | G | I | C | G | S | D | S | S | V | L | K | E | I | I | P | S | K | F | P | V | I | L | G | H | E | A | V | G | V | V | E | S | . |
. |
I | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  | B | S | S | . | T | T | S |
| . | . | . | . | . |
|  |  |  |  |  |  |  |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  | T | T | S | S |
|
|
| S | S | B |
|
|
|
|
|  |  |  |  |  |  |  | . | . |  |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
| . |
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1006 | . | . | . | 1010 | . | . | . | . | . | . | |
. | . | . | 1020 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | |
|
. | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | N | H | P | D | Y | Q | S | G | D | W | V | L | G | Y | S | G | W | Q | D | Y | D | I | S | S | G | D | D | L | V | K | L | G | D | H | P | Q | N | P | S | W | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | G | V | L | G | M | P | G | F | T | A | Y | M | G | L | L | D | I |
Query Conservation |   |
  |   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|
Template Sequence |   |
A | G | V | T | C | V | K | P | G | D | K | V | I | P | L | F | V | P | Q | C | G | S | C | R | A | C | K | S | S | N | S | N | F | C | E | K | N | D | M | G | A | K | T | G | L | M | A | D | M | T | S | R | F | T | C | R | G | K | P | I | Y | N | L | M | G | T | S | T | F | T | E | Y | T | V | V | A | D | I | A | V |
Template Known Secondary structure |   |
T | T |
|
| S |
|
| T | T |
|  |  |  |  |
| S | S |
|
|
| S | S | S |  |  |  |  |
| T | T |
|
|
|
| T | T |
| S | T | T | T |
|
|
| S |
| T | T | S |
|
| S |  |  |  | T | T |  |  |  | B |
| S | T | T | T |
|
| S | B | S |  |  |  |  |  | T | T | S |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1078 | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . | . | . | . | . | . | . | 1150 | . | . | . | . | . | . | . |
  |
  |   |
145 | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | P | K | E | G | E | T | L | V | V | A | A | A | T | G | P | V | G | A | T | V | G | Q | I | G | K | L | K | G | C | R | V | V | G | V | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|
|   |
|
|   |   |
|   |   |
|
|
|
|
|   |   |   |   |   |
Template Sequence |   |
A | K | I | D | P | K | I | N | V | N | F | L | V | S | T | K | L | T | L | D | Q | I | N | K | A | F | E | L | L | S | S | G | Q | G | V | R | S |
Template Known Secondary structure |   |
 |  |  |
|
|
|
|
| G | G | G | G |  |  |  |  |  |
| G | G | G |  |  |  |  |  |  |  | T | T | T | S | S |
| S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1158 | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | . | . |
  |