Job Description P76113 Confidence 100.00% Date Thu Jan 5 12:19:05 GMT 2012 Rank 18 Aligned Residues 317 % Identity 19% Template c1y9eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		K	Q	R	N	R	R	W	V	L	A	S	R	P	H	G	A	P	V	P	E	N	F	R	L	E	E	D	D	V	A	T	P	G	E	G	Q	V	L	L	R	T	V	Y	L	S	L	D	P	Y	M	R	G	R	M	S	D	E	P	S	Y	S	.	.	P	P	V	D	I	G	G	V	M	V	G	G	T	V	S	R	V
Query Conservation																																																															.	.
Alig confidence														.	.	.	.																																														.	.														.	.	.	.
Template Conservation														.	.	.	.																																																													.	.	.	.
Template Sequence		S	T	L	F	Q	A	L	Q	A	E	K	N	.	.	.	.	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	G	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	.	.	.	.
Template Known Secondary structure							B							.	.	.	.	T	T					B						G	G	G	S		S	S	S																			S	T	T		S				S	S						S							.	.	.	.
Template Predicted Secondary structure														.	.	.	.																																																													.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																		.
Query SS confidence																				.	.	.	.	.	.	.	.	.																																		.
Query Sequence		V	E	S	N	H	P	D	Y	Q	S	G	D	W	V	L	G	Y	S	.	.	.	.	.	.	.	.	.	G	W	Q	D	Y	D	I	S	S	G	D	D	L	V	K	L	G	D	H	P	Q	N	P	S	W	S	L	G	V	L	G	M	P	.	G	F	T	A	Y	M	G	L	L	D	I	G	Q	P	K	E	G	E	T
Query Conservation																				.	.	.	.	.	.	.	.	.																																		.
Alig confidence																				.	.	.	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence		V	S	S	N	D	P	R	F	A	E	G	D	E	V	I	A	T	S	Y	E	L	G	V	S	R	D	G	G	L	S	E	Y	A	S	V	P	G	D	W	L	V	P	L	P	Q	N	L	S	L	K	E	A	X	V	Y	G	T	A	G	F	T	A	A	L	S	V	H	R	L	E	Q	N	G	L	S	P	E	K	G	S
Template Known Secondary structure			S		S		T	T			T	T							S	T	T	B	T	T	T	B			S	S	B	S						G	G	G						T	T																									T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	A	A	A	T	G	P	V	G	A	T	V	G	Q	I	G	K	L	K	G	C	R	V	V	G	V	A	G	G	A	E	K	C	R	H	A	T	E	V	L	G	F	D	V	C	L	D	H	H	A	D	D	F	A	E	Q	L	A	K	A	C	P	K	G	I	D	I	Y	Y	E	N	V	G	G	K	V	F	D
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		V	L	V	T	G	A	T	G	G	V	G	G	I	A	V	S	X	L	N	K	R	G	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A	S	E	V	I	.	.	S	R	E	D	V	Y	D	G	T	L	K	A	L	S	K	Q	Q	W	Q	G	A	V	D	P	V	G	G	K	Q	L	A
Template Known Secondary structure					S	S	T	T	S													T	T								S		T	T	T							T	T		S				.	.						S	S	S				S	S						S					S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	P	L	L	N	T	S	A	R	I	P	V	C	G	L	V	S	S	Y	N	A	T	E	L	P	P	G	P	D	R	L	P	L	L	M	A	T	V	L	K	K	R	I	R	L	Q	G	F	I	I	A	Q	D	Y	G	H	R	I	H	E	F	Q	R	E	M	G	Q	W	V	K	E	D	K	I	H	Y	R	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	L	S	K	I	Q	Y	G	G	S	V	A	V	S	G	L	T	G	G	.	.	.	.	.	.	.	.	.	.	G	E	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	D	S	V	Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D	L	K	P	D	Q	L	L	T	I	V
Template Known Secondary structure					T	T			T	T									T	T		.	.	.	.	.	.	.	.	.	.	S						S															S	T	T													T	T	T	T	T			S		S	G	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.											.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	T	D	G	L	E	N	A	P	Q	T	F	I	G	L	L	K	G	K	N	F	G	K	V	V	I	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	E	V	S	L	E	E	T	P	G	A	L	K	D	I	L	Q	N	R	I	Q	G	R	V	I	V	K	L
Template Known Secondary structure							S	T	T								S	S	S	S			S	S					B
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions