Job Description P0AC94 Confidence 1.16% Date Thu Jan 5 11:17:39 GMT 2012 Rank 32 Aligned Residues 213 % Identity 10% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.																.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		V	L	N	I	L	W	V	V	F	G	I	G	L	M	L	V	L	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	I	N	S	M	V	A	L	L	V	A	A	L	S	V	G	M	L	A	.	.	.	.	.	.	.	G	M	D	L	M	S	L	L	H	T	M	K	A	G	F	G	N	T
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I
Template Known Secondary structure																					T	T		S					T	T	S																														T	S	S	S		S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.																																																			.	.	90
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	E	L	A	I	I	V	V	F	G	A	V	I	G	K	L	M	V	D	S	G	A	A	H	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	T
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V
Template Known Secondary structure					S																	T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.								.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		L	L	A	R	L	G	L	R	Y	V	Q	L	S	V	I	I	I	G	L	I	F	G	L	A	M	F	Y	E	V	A	F	I	M	L	A	P	L	V	I	V	I	A	A	E	A	K	I	P	F	L	K	L	A	I	P	A	V	A	A	A	T	T	A	H	.	.	.	.	.	.	.	S	L	F	P	P	Q	P	G	P
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	L	S	I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I
Template Known Secondary structure									S										T	S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	V	N	A	Y	G	A	D	M	G	M	V	Y	I	Y	G	V	L	V	T	I	P	S	V	I	C	A	G	L	I	L	P	K	F	L	G	N	L	E	R	P	T	P	S	F	L	K	A	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E	N
Template Known Secondary structure								T	T	T	T		T	T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions