Return to main results Retrieve Phyre Job Id

Job DescriptionP28635
Confidence98.44%DateThu Jan 5 11:45:06 GMT 2012
Rank65Aligned Residues206
% Identity11%Templated2ozza1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50...... ...60.........70.........80.........90.........100........ .110.
Predicted Secondary structure 




.



















..


Query SS confidence 





















.



















































. .


Query Sequence  VGVIVGAEQQVAEVAQKVAKDK. YGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGN. . TFV
Query Conservation 

                    .    
             
   
  
                    
     ..   
Alig confidence 





















.









































.








..


Template Conservation 

 





  







   
  

   





  


 
  
 







 

   
   . 
 

  

  


Template Sequence  VCAXPLPYTRLYEGLASGLKAQFDGIPFYYAHXRGADIRVECLLNGVYDXAVVSRLAAESYLSQN. NLCIALELGPHTYV
Template Known Secondary structure 



STTTTS

S
TTS
SS.


TTSSS
Template Predicted Secondary structure 















.






Template SS confidence 















































































   16...20.........30.........40.........50.........60.........70.........80 .........90....
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  YPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSL
Query Conservation                 
   
                 
   

                                    
Alig confidence 














....





















......................
















Template Conservation 
 



        
.... 




  
 

  

      ......................  

 


 
 
    
Template Sequence  GEHQLICRKGESGNV. . . . KRVGLDSRSADQKIXTDVFFGD. . . . . . . . . . . . . . . . . . . . . . SDVERVDLSYHESLQRI
Template Known Secondary structure 

TT
GGG
....

TT
TT......................S



Template Predicted Secondary structure 







....






......................



Template SS confidence 















































































   95....100......... 110.........120.........130. ........140........
 
   192.......200.........210.........220..... ....230.........240....... ..250.........260........
Predicted Secondary structure 















..





.







Query SS confidence 

































. .





















.




















Query Sequence  DDAQIALAVINTTYASQIGLTPAKDGIFVEDKES. . PYVNLIVTREDNKDAENVKKFV. QAYQSDEVYEAANKVFNGGAV
Query Conservation    
 


                   
       ..               
  
 
 .    
 
    
   
     
Alig confidence 

































..






....










.




















Template Conservation    
 


 


 

       
   

          





....   
  
  

   

 
 
  

  

 
   
Template Sequence  VKGDVDAVIWNVAENELTXLGLEATPLTDDPRFLQATEAVVLT. . . . RVDDYPXQQLLRAVVDKHALLAHQQRVVSGEQE
Template Known Secondary structure  TS



TT

S
TT
....TT


TTSS
Template Predicted Secondary structure 



















....










Template SS confidence 















































































   149150.........160.........170.........180.........190. ........200.........210.........220....
 
   269270.
Predicted Secondary structure 


Query SS confidence 


Query Sequence  KGW
Query Conservation     
Alig confidence 


Template Conservation 
 
Template Sequence  PSY
Template Known Secondary structure 


Template Predicted Secondary structure 


Template SS confidence 


   226..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions