Return to main results Retrieve Phyre Job Id

Job DescriptionP28635
Confidence99.64%DateThu Jan 5 11:45:06 GMT 2012
Rank23Aligned Residues206
% Identity16%Templated2nxoa1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.04

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60......... 70.........80.........90.........100.........
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Query Sequence  NHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDY. VLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNT
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Template Sequence  TRPRVGHIQFLNCLPLYW. . . . GLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCD
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SGGG....TSGGGG

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   5....10.........20.. .......30.........40.........50.........60.........70.........80
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  FVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPR
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Template Sequence  GPVMSCVIVSQ. VPLDRLD. GARVALGSTSRTSVRLAQLLLSERF. . . . . . . . . . . . . . . . . . GVQPDYYTCPPDLSLMA
Template Known Secondary structure  S

SSS.S
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S.SSTT
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   81........90. ....... .100.........110.........120... ......130.........140
 
   190.........200.........210.........220.........230...... ...240.........250.........260..
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Query Sequence  SLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTRED. . . NKDAENVKKFVQAYQSDEVYEAANKV
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Template Sequence  AVLIGDAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAF. . LASRNLSLEE
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   146...150.........160.........170.........180.........190.........200......... 210.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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