Job Description P28635 Confidence 91.17% Date Thu Jan 5 11:45:06 GMT 2012 Rank 178 Aligned Residues 200 % Identity 15% Template d2i6ea1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.50

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	G	N	T	F	V
Query Conservation
Alig confidence																			.	.	.											.	.	.
Template Conservation																			.	.	.											.	.	.
Template Sequence		P	Y	R	A	G	W	I	H	F	T	N	V	A	P	I	L	D	.	.	.	S	L	E	L	P	P	G	V	T	A	.	.	.	I	T	G	V	P	T	Q	X	N	A	A	L	L	S	G	E	V	D	I	A	N	V	S	A	V	E	F	I	R	H	A	D	T	L	A	A	L	P	D	F	S	V	A	V	L	G	P
Template Known Secondary structure											G	G	G					T	.	.	.	T					T	T				.	.	.															S	S		S												T	T	T	T												S	S
Template Predicted Secondary structure																			.	.	.											.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	.	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S
Query Conservation																																						.
Alig confidence											.	.	.	.																								.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	S	V	N	L	F	H	T	.	.	.	.	C	P	L	P	E	L	R	R	V	A	L	T	S	Q	S	A	X	S	V	A	L	L	E	V	L	L	R	Q	K	G	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	R	A	E	G	T	A	E	S
Template Known Secondary structure			S	S						S	.	.	.	.	S		G	G	G								T	T															T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure											.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																								.	.	.	.	.	.	.	.	140	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																		210	.	.	.	.	.	.	.	.	.	220									.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Query Sequence		L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	P	A	K	D	G	I	F	V	.	.	.	.	.	.	.	.	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	A	G	Y	D	G	V	L	R	I	G	D	D	A	L	R	E	W	Y	G	V	V	G	P	L	T	P	E	R	T	X	T	S	L	P	H	T	G	R	G	I	T	V	T	D	L	A	Q	E	W	F	D	L	T	G	H	P	F	T	F	A	V	W	A	Y	R	K	D	N	P	P	P	A	A	L	L	Q	A
Template Known Secondary structure				T	T	T		S						S											S					S	S	S		G	G	G			S			T	T															S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		246	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		F	V	Q	A	Y	.	.	.	.	.	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence		X	R	E	A	R	R	R	G	I	G	H	L	A	E	V	S	Q	R	H	A	E	K	L	G
Template Known Secondary structure												T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions