Job Description P28635 Confidence 98.80% Date Thu Jan 5 11:45:06 GMT 2012 Rank 41 Aligned Residues 221 % Identity 17% Template d1xc1a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.51

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	.	.	.	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																									.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		D	I	T	V	.	.	Y	N	G	Q	H	K	E	A	A	Q	A	V	A	D	A	F	T	R	A	T	G	I	K	V	K	L	N	S	A	K	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P	L	P	A	S	T
Template Known Secondary structure						.	.				S																																				T	T		T	T	S	S		S					S											T	T		B
Template Predicted Secondary structure						.	.
Template SS confidence
		1	.	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	.	.	.	.	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.																									.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		I	N	E	T	R	G	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	K	S	V	L	N	Y	A	T	P	K	W	K	N	R	I	G	Y	V	P	T	S	G	A	F	L	E	Q	I	V	A	I	V	K	L	K	G	.	.	.	.
Template Known Secondary structure					T			T	T	S				T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	S	S	G	G	G	T	T	T					T	T																	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																.	.	.	.																								.	.	.	.
Query SS confidence																																																.	.	.	.																								.	.	.	.
Query Sequence		K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	.	.	.	.	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	.	.	.	.	Y	V	N
Query Conservation																																																.	.	.	.																								.	.	.	.
Alig confidence		.	.	.	.	.	.																																									.	.	.	.																								.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	G	K	P	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	F	A	R	E	K	G	V	Q	N	V	H	T	R	L	N	F	V	R	H	R	D	P	G	A	L	V	T	Y	S
Template Known Secondary structure		.	.	.	.	.	.															S				S	S										T	T	S	S	S																		G	G	G										T	T		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	A	V	L	K	S	S	Q	N	K	D	E	A	K	K	F	V	A	F	L	A	G	K	E	G	Q	R	A	L	T	A	V	R	A
Template Known Secondary structure						B	T	T		S														S								T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions