Job Description P28635 Confidence 98.79% Date Thu Jan 5 11:45:06 GMT 2012 Rank 43 Aligned Residues 219 % Identity 11% Template d1twya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.65

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	G	N	T	F	V
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		E	I	T	I	S	G	S	T	S	V	A	R	I	X	D	V	L	A	E	K	Y	N	Q	Q	H	P	E	T	Y	V	A	V	Q	G	V	G	S	T	A	G	I	S	L	.	L	K	K	G	V	A	D	I	A	X	T	S	R	Y	L	T	E	S	E	A	Q	N	T	L	H	T	F	T	L	A	F	D	G	L	A	I
Template Known Secondary structure																											T	T								S									.			T	T	S		S					S	S				T	T	T			T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	N	Q	A	N	P	V	T	N	L	T	R	E	Q	L	Y	G	I	Y	K	G	Q	I	T	N	W	K	Q	V	G	G	N	D	Q	K	I	A	V	V	T	R	E	A	S	S	G	T	R	Y	S	F	E	S	L	X	G	L	T	K	T	.	.	.	.	.	.	.	.	.	.	.	V	K	D	R	E	V	S	D
Template Known Secondary structure					T	T																	T	S			B	G	G	G	G	T	S		S		B								T	T												T					.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.												.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	.	.	.	.	.	.	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	P	T	A	L	V	V	N	S	N	S	X	X	K	T	L	V	N	H	N	T	Q	A	V	G	F	I	S	I	G	S	V	D	K	S	V	K	A	I	Q	F	E	K	A	D	P	T	S	D	N	I	A	K	H	T	Y	Q	L	S	R	P	F	L	I	L	H	Y	S	D	N	A	D	E	Q	T	K	E	F	I
Template Known Secondary structure		S		T	T	S				S	S												T	T							G	G	G			T	T	S						T	T	B									T	T		S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	L	K	S	E	S	A	K	K	L	I	V	E	Y
Template Known Secondary structure						S										T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions