Job Description P28635 Confidence 96.99% Date Thu Jan 5 11:45:06 GMT 2012 Rank 146 Aligned Residues 164 % Identity 13% Template d1tfda_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.30

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	G	N	.	.	.	.	.	.	.	.	.	T	F	V	Y	P	I	A	G
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	D	S	M	K	K	V	L	P	E	D	G	P	R	I	I	C	V	K	K	A	S	Y	L	D	C	I	K	A	I	A	A	H	E	A	D	A	V	T	L	D	A	G	L	V	H	E	A	G	L	T	P	N	N	L	K	P	V	V	A	E	F	Y	G	S	K	E	N	P	K	T	F	Y	Y	A	V	A	L	V
Template Known Secondary structure							T	T	T	S		S	S	S									S	S										T	T	S			B													T	T	T	T											S		S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180														.	.
Predicted Secondary structure																		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	.	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L
Query Conservation																		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	G	S	N	F	Q	L	N	E	L	Q	G	K	K	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	L	L	Y	C	D	L	P	E	P	R	K	P	L	E	K	A	V	A	S	F	F	S	G	S	C	V	P	C	A	D	Q	L	C	Q	L	C	P	G	C	G	C	S	S	S	Q	P	Y	F
Template Known Secondary structure			T	T					T	T			T	T						S		T	T		T	T	T	T								T	T	T	S		S			S	S							T	T	S	S	S				T	T					B	S	S	S	T	T			S	S	S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	G	A	F	K	C	L	K	D	G	L	G	D	V	A	F	V	K	Q	E	T	I	F	E	N
Template Known Secondary structure		S									T	T	T	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions