Return to main results Retrieve Phyre Job Id

Job DescriptionP28635
Confidence98.24%DateThu Jan 5 11:45:06 GMT 2012
Rank81Aligned Residues210
% Identity14%Templated1sw5a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60...... ...70.........80..... ....90..
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Query Sequence  NHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTF. NDYVLPNEALSKGDIDANA. . . . . . . . . . . . . . . . . FQHKPYL
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Template Sequence  ERVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYI
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SSTT


TT

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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   93. .....100.........110........ .120......... 130.........140.........150.......
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Query Sequence  DQ. . . . . QLKDRGYKLVAVGNTFVYPIAGYS. . . . . . KKIKSLDELQD. . . . GSQVAVPNDPTNLGRSLLLLQKVGLIKL
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Template Sequence  FDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGF. . .
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T

BGGGGTTTGGG

STTST
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   86...90.........100.........110.........120.........130.........140.........150.........160..
 
   158.160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  KDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTRED.
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Template Sequence  . . . . . . . . . . . . . . . . . EFKEVKQMEPTLMYEAIKNKQVDVIPAYTTDSRVDLFN. LKILEDDKGALPPYDAIIIVNGNT
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S

GGGTTS
STT
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TT

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   163......170.........180.........190.........200 .........210.........220....
 
   237..240......... 250.........260.
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Query Sequence  NKDAENVKKFVQA. . . YQSDEVYEAANK
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Template Sequence  AKDEKLISVLKLLEDRIDTDTMRALNYQ
Template Known Secondary structure  GG
TTTT


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   225....230.........240.........250..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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