Job Description P28635 Confidence 98.52% Date Thu Jan 5 11:45:06 GMT 2012 Rank 60 Aligned Residues 221 % Identity 17% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																															.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	.	.	.	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.																									.	.	.	.	.	.	.	.
Alig confidence						.	.																																								.	.	.																									.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		D	I	T	V	.	.	Y	N	G	Q	Q	K	E	A	A	T	A	V	A	K	A	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I	S	E	Q	T
Template Known Secondary structure						.	.				S																S																						G	G	G				S					S		G	G	G							T	T		B
Template Predicted Secondary structure						.	.
Template SS confidence
		1	.	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																					101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	.	.	.	.	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																									.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		I	Q	Q	T	A	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	K	W	K	G	K	I	G	Y	V	S	T	S	G	A	F	L	E	Q	V	V	A	L	S	K	M	K	G	.	.	.	.
Template Known Secondary structure				T	T			T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	T					T	T	S																.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																.	.	.	.																								.	.	.	.
Query SS confidence																																																.	.	.	.																								.	.	.	.
Query Sequence		K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	.	.	.	.	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	.	.	.	.	Y	V	N
Query Conservation																																																.	.	.	.																								.	.	.	.
Alig confidence		.	.	.	.	.	.																																									.	.	.	.																								.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	K	V	A	L	N	W	L	K	G	L	K	E	N	G	K	L	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V	E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y	S
Template Known Secondary structure		.	.	.	.	.	.																			S	S										T	T	S		S																		G	G	G		S								T	T		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	A
Template Known Secondary structure						B	T	T		S														S											S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions