Job Description P28635 Confidence 97.41% Date Thu Jan 5 11:45:06 GMT 2012 Rank 126 Aligned Residues 180 % Identity 12% Template d1jnfa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.60

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	.	.	.	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		E	K	T	V	R	W	C	A	V	N	D	H	E	A	S	K	C	A	N	F	R	D	S	M	K	K	V	L	P	E	D	G	P	R	I	I	C	V	K	K	A	S	Y	L	D	C	I	K	A	I	A	A	H	E	A	D	A	V	T	L	D	A	G	L	V	H	E	A	G	L	T	P	N	N	L	K	P	V	V	A
Template Known Secondary structure																													S		T	T	S									S	S										T	T	S			B													S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
											107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																											.
Query SS confidence		.	.	.	.	.	.	.	.	.																											.
Query Sequence		.	.	.	.	.	.	.	.	.	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	.	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N
Query Conservation		.	.	.	.	.	.	.	.	.																											.
Alig confidence		.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		E	F	Y	G	S	K	E	N	P	K	T	F	Y	Y	A	V	A	L	V	K	K	G	S	N	F	Q	L	N	E	L	Q	G	K	K	S	C	H	T	G	L	G	R	S	A	G	W	N	I	P	I	G	L	L	L	C	D	L	P	E	P	R	K	P	L	E	K	A	V	A	S	F	F	S	G	S	C	V	P	C	A
Template Known Secondary structure				B	S		S	S	S		B	S										T	T					G	G	G		T	T						S		T	T		T	T	T	T								G	G	G	S		S			S	S									S	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		177	.	.																			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	A	D	F	P	Q	L	C	Q	L	C	P	G	C	G	C	S	S	V	Q	P	Y	F	G	Y	S	G	A	F	K	C	L	K	D	G	L	G	D	V	A	F	V	K	Q	E	T	I	F	E	N
Template Known Secondary structure			T	T	T		G	G	G	G	T	T	S	T	T				S	T	T	S	T	T												T	T	S		S						T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions