Job Description P28635 Confidence 97.31% Date Thu Jan 5 11:45:06 GMT 2012 Rank 130 Aligned Residues 220 % Identity 11% Template d1h76a1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Transferrin Resolution 2.15

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	.	.	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	G
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		Q	K	T	V	R	W	C	T	I	S	N	Q	E	A	N	K	C	S	S	F	R	E	N	M	S	K	A	V	K	N	G	P	L	V	S	C	V	K	K	S	S	Y	L	D	C	I	K	A	I	R	D	K	E	A	D	A	V	T	L	D	A	G	L	V	F	E	A	G	L	A	P	Y	N	L	K	P	V	V	A	E
Template Known Secondary structure											S																			S	S	S									S	S										T	T	S			B												T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
											108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	.	.	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	.	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L
Query Conservation		.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		F	Y	G	Q	K	D	N	P	Q	T	H	Y	Y	A	V	A	V	V	K	K	G	S	N	F	Q	W	N	Q	L	Q	G	K	R	S	C	H	T	G	L	G	R	S	A	G	W	I	I	P	M	G	L	L	Y	D	Q	L	P	E	P	R	K	P	I	E	K	A	V	A	S	F	F	S	S	S	C	V	P	C	A	D
Template Known Secondary structure			B	S		T	T	S		B	S										T	T					G	G	G		T	T						S		T	T		T	T	T	T								G	G	G	S		S			S	S									S	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		178	.	180																								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																		.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																		.	.	.	.	.	.
Query Sequence		K	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	.	.	.	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																		.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	N	F	P	K	L	C	Q	Q	C	A	G	K	G	A	E	K	C	A	C	S	N	H	E	P	Y	F	G	Y	A	G	A	F	N	C	L	K	E	D	A	G	D	V	A	F	V	K	H	S	T	V	L	E	N	L	P	D	K	A	D	R	D	Q	Y	E	L	L	C	R	D	N	T	R	R	P	V	D	D	Y
Template Known Secondary structure		T	T	T						T	T					G	G	G	T	T		S	S	T	T	S	T	T												T	T	S		S						T	T						S		S	S			G	G	G						T	T	S					G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
										226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	C	Y	L	A	Q	V	P	S	H	A	V	V	A	R	S	V	D	G	Q	E	D	S	I	W	E	L	L	N	Q	A
Template Known Secondary structure		G	G	S		S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions