Job Description P28635 Confidence 95.98% Date Thu Jan 5 11:45:06 GMT 2012 Rank 158 Aligned Residues 241 % Identity 16% Template c3qufB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.												.
Query SS confidence																																																	.	.	.	.												.
Query Sequence		G	Q	D	E	K	D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	.	.	.	.	L	P	N	E	A	L	S	K	G	D	I	.	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D
Query Conservation																																																	.	.	.	.												.
Alig confidence														.																																			.	.	.	.												.
Template Conservation														.
Template Sequence		G	T	A	G	G	G	K	T	K	I	S	F	.	Y	S	Y	F	K	D	N	Q	I	G	E	V	V	K	G	F	E	K	K	N	P	D	I	T	L	D	V	Q	Y	G	Q	D	P	A	Q	Y	I	S	T	L	Q	T	R	L	A	G	G	K	P	P	T	I	F	N	L	T	X	D	N	R	T	D	V	X	K	S	G
Template Known Secondary structure				G	G	G								.			S	S																	T	T									S	S														S	S	S			S						T	T	T								T
Template Predicted Secondary structure														.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		99																								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.											.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	.	.	.	.	.	.	.	.	.	.	K	K	I	K	S	L	D	E	L	.	.	.	.	.	.	.	.	.	Q	D	G	S	Q	V	A	V	P
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	D	I	S	G	E	D	F	L	D	G	I	D	D	T	N	F	A	L	F	Q	Q	D	G	K	T	Y	G	X	P	V	S	A	W	V	G	A	F	F	Y	N	K	D	I	L	K	K	A	G	Y	D	K	F	P	K	T	W	D	E	F	I	E	X	G	K	K	I	N	S	N	G	S	T	A	F	L	E	D
Template Known Secondary structure			B				T	T		G	G	G	T	T	B		G	G	G	G	G	G	G			T	T					B																			T	T		S	S			S	B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	N	T	Q	I	A	G	S	F	T	G	L	L	A	S	Y	Y	G	E	Q	G	K	S	G	D	L	D	A	D	I	W	S	G	K	S	T	F	T	K	D	W	T	P	V	F	K	R	W	E	A	A	A	K	A	G	V	I	P	Q	K	S	V	G	L	S	A	D	Q	V	K	Q	E	F	V	S	G	N	L	G	V
Template Known Secondary structure			S	S	S	S														T	T	T			S	S	T	T						T	S	S																			T	T	S	S		G	G	G	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	.	.	.	.	.	.	.	.	.	.	.	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	R	S	G	P	W	D	L	P	D	L	Q	K	S	D	I	D	F	G	V	A	P	F	P	A	Y	S	K	E	D	G	Q	W	I	N	G	G	P	D	Q	G	F	A	I	A	S	R	A	S	D	K	E	K	A	A	A	K	K	F	L	A	Y	L	N	S	E	E	G	L	E	A	F	T	S	A	A	G	T
Template Known Secondary structure						G	G	G							S	S										B	S	S		T	T									S						B	T	T	S																T	S												T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions