Job Description P28635 Confidence 98.68% Date Thu Jan 5 11:45:06 GMT 2012 Rank 46 Aligned Residues 239 % Identity 14% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																				.	.	.																			.	.	.	.	.	.
Query SS confidence																			.																																				.	.	.																			.	.	.	.	.	.
Query Sequence		P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	.	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	.	.	.	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.	.
Query Conservation																			.																																				.	.	.																			.	.	.	.	.	.
Alig confidence																			.																																				.	.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L	A	Q	V	D	E
Template Known Secondary structure		T																				T																															S	S		S		S															T	T		B					T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
																						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	.	.	.	.	.	.	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	D	K	I	Q	G	G	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	V	F	F	N	N	L	S	S	N	V	R	G	A	E	V	L	S	X	F	G
Template Known Secondary structure		T	T		G	G	G	G	G	S		G	G	G	T	G	G	G	T	T	S						B									T	T	T	S	T	T			S	S											T	T	T	T	T							G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	.	I	V
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		K	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	V	L	L	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	G	X	V	K	W	V	D	P	T	E	G	A	V	S	S	G	P	V	X
Template Known Secondary structure					S	S	S	T	T													G	G	G							S	T	T									T	S		S																T	T	T	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G	G	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	K	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q	K	A	F	C	E	A	X	Y	Y	G	A	V
Template Known Secondary structure				B	T	T	S													T	S												T		B		S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions