Job Description P28635 Confidence 99.70% Date Thu Jan 5 11:45:06 GMT 2012 Rank 20 Aligned Residues 223 % Identity 17% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	.	.	.	.	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		D	Q	P	V	I	N	F	G	I	I	S	T	E	S	S	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	G	Y	Q	V	K	A	F	F	A	P	D	Y	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G	N	K	A	A	X	E	A	V	D	R	A	H	G	E	I	F	A
Template Known Secondary structure													S	S																					S	S								S	S										T	T	S		S																S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		105	.	.	.	.							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure							.	.	.	.	.	.																		.	.	.	.																	.	.	.
Query SS confidence							.	.	.	.	.	.																		.	.	.	.																	.	.	.
Query Sequence		A	V	G	N	T	.	.	.	.	.	.	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	.	.	.	.	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	.	.	.	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V
Query Conservation							.	.	.	.	.	.																		.	.	.	.																	.	.	.
Alig confidence							.	.	.	.	.	.																		.	.	.	.			.														.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																				.																																					.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	D	S	K	I	D	S	L	E	D	X	L	A	N	A	K	.	S	L	T	F	G	N	G	D	P	N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P	V	K	A	F	K	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T			S										T	T		S			S							T	G	G	.	G								T	T		T	T	T	T							T	T	T	T	T	T							S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	.	.	.	.	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V
Query Conservation																																												.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																				.	.	.	.																				.	.
Template Conservation		.	.	.	.	.	.	.																																																											.	.
Template Sequence		.	.	.	.	.	.	.	T	L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	K	S	P	L	I	P	G	D	P	L	V	W	.	.	R	N	N	L	S	D	E	Q	K	N	K	L	R
Template Known Secondary structure		.	.	.	.	.	.	.															T	T	S	S	S																					T	T																		.	.		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																											.	.
Template SS confidence
									176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.
		248	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		Q	A	Y	.	.	.	.	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G	G	A	V	K	G
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		D	F	F	F	K	Y	G	A	N	A	E	Q	K	K	V	L	A	D	L	Q	W	S	K	F	Q	A	S
Template Known Secondary structure										S										T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions