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Job DescriptionP28635
Confidence98.50%DateThu Jan 5 11:45:06 GMT 2012
Rank61Aligned Residues210
% Identity12%Templatec3k4uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine
Resolution2.62 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40... ......50.........60.........70.........80.........90.........100
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Query Sequence  HIKVGVIVGAEQ. . . . . . . . . . . QVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRG
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Template Sequence  ELRVGLEPGYLPFEXKDKKGNVIGFDVDLAREXAKAXGVKLKLVPT. SWDGLIPGLVTEKFDIIISGXTISQERNLRVNF
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TTSTTT
TTTST

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GGGTTS
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B

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   4.....10.........20.........30.........40......... 50.........60.........70.........80..
 
   101........110.........120.........130.........140.........150.........160.........170.........180
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Query Sequence  YKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIV
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Template Sequence  VEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRL. . . . . . . . . . . . . . . . . . . . . . . FKNAKLKT
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S
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TTTTTT

SGGGG

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   83......90.........100.........110.........120.........130. ........
 
   181........190.........200........ .210.........220.........230.........240.........250 .....
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Query Sequence  ELEAPQLPRSLDDAQIALAVINTTYASQ. IGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAY. . . . QSDEV
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Template Sequence  YDTEAEAVQEVLNGKADXFIFDLPFNVAFXAQKGQGYLVHLDTSLTYEPLGWAIKKG. . DPDFLNWLNHFLAQIKHDGSY
Template Known Secondary structure  SSSSSSTTTTT



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   140.........150.........160.........170.........180.........190...... ...200.........210.......
 
   256...260.......
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Query Sequence  YEAANKVFNGGA
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Template Sequence  DELYERWFVDTK
Template Known Secondary structure  T

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   218.220.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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