Job Description P28635 Confidence 96.60% Date Thu Jan 5 11:45:06 GMT 2012 Rank 153 Aligned Residues 234 % Identity 13% Template c3k02A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium. Resolution 1.55 Å

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		32	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																							.													.	.	.												.	.																				.	.	.	.	.
Query SS confidence						.																							.													.	.	.												.	.																				.	.	.	.	.
Query Sequence		H	I	K	V	.	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	.	G	L	D	V	E	L	V	T	F	N	D	Y	.	.	.	V	L	P	N	E	A	L	S	K	G	D	.	.	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.
Query Conservation						.																							.													.	.	.												.	.																				.	.	.	.	.
Alig confidence						.																							.													.	.	.												.	.																				.	.	.	.	.
Template Conservation
Template Sequence		T	V	T	F	W	D	T	S	N	E	A	E	K	A	T	Y	Q	A	L	A	E	G	F	E	K	E	H	P	K	V	D	V	K	Y	V	N	V	P	F	G	E	A	N	A	K	F	K	N	A	A	G	G	N	S	G	A	P	D	V	M	R	T	E	V	A	W	V	A	D	F	A	S	I	G	Y	L	A	P	L	D
Template Known Secondary structure											T	T	T																T	T																							T	T	S	S			S						T	T								T	T		B				T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
																							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.									130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	.	.	.	.	.	.	.	.	.	I	K	S	L	D	E	L	Q	D	.	.	.	.	.	.	.	.	G	S	Q	V	A	V	P	N	D	P	T	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	P	A	L	D	D	G	S	D	H	L	P	Q	A	A	A	S	T	R	Y	E	G	K	T	Y	A	V	P	Q	V	I	D	T	L	A	L	F	Y	N	K	E	L	L	T	K	A	G	V	E	V	P	G	S	V	A	E	L	K	T	A	A	A	E	I	T	E	K	T	G	A	T	G	L	Y	L	R	G	D	D
Template Known Secondary structure		T	S	T	T		S	S	G	G	G	B							T	T			T	T																									T					S	B																S									S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	.	.	.	.	.	.	.	.	.	.	.	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	W	F	L	P	Y	L	Y	G	E	G	G	D	L	V	D	E	K	N	K	T	V	T	V	D	D	E	A	G	V	R	A	Y	R	V	I	K	D	L	V	D	S	K	A	A	I	T	D	A	S	D	G	W	N	N	M	Q	N	A	F	K	S	G	K	V	A	M	M	V	N	G	P	W	A	I	E	D	V	K
Template Known Secondary structure		G	G	G	G							T	T			S			T	T	T	T				T	T	S																T	T	S					S	S												T	T	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		211	.	.	.	.	.												.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	P	A	K	D	.	.	.	.	.	.	.	.	.	.	.	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	A	R	F	K	D	A	G	N	L	G	V	A	P	V	P	A	G	S	A	G	Q	G	S	P	Q	G	G	W	N	L	S	V	Y	A	G	S	K	N	L	D	A	S	Y	A	F	V	K	Y	M	S	S	A	K	V	Q	Q	Q	T	T	E	K	L	S	L
Template Known Secondary structure		T	S	G	G	G	S	S	G	G	G								B		S	S					B									B	T	T		S													T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions