Return to main results Retrieve Phyre Job Id

Job DescriptionP28635
Confidence98.16%DateThu Jan 5 11:45:06 GMT 2012
Rank86Aligned Residues218
% Identity16%Templatec3hv1A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........ 40.........50.........60.........70.........80.........90.........
Predicted Secondary structure 

...........



















Query SS confidence 








. . . . . . . . . . .



























































Query Sequence  NHIKVGVIV. . . . . . . . . . . GAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDR
Query Conservation    
 

   ...........                     
             
   
  
                 
Alig confidence 








...........


























.


























...

Template Conservation    
 
       
    
  
   
   

   

  

        .              
            ...  
Template Sequence  KKIKIGFDATFVPXGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAI. DWDXKETELKNGTIDLIWNGYSVTDER. . . KQ
Template Known Secondary structure  T
TTTT
TTS

TTT

.
GGGTS
S
SS
B

...T
Template Predicted Secondary structure 
















.












...
Template SS confidence 















































































   44.....50.........60.........70.........80.........90 .........100.........110....... ..
 
   100.........110.........120.........130.........140.........150.........160.........170.........
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  GYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKI
Query Conservation     
                       
   
                 
   

                         
Alig confidence 






















































.................







Template Conservation                                        
                .................      
 
Template Sequence  SADFTEPYXVNEQVLVTKKSSGIDSVAGXAGKTLGAQAGSSGYDAFNASPKILKD. . . . . . . . . . . . . . . . . VVANQKVV
Template Known Secondary structure  T





GGG


SSGGGTT

TT

TTTTTT.................TSGGG
Template Predicted Secondary structure 



























.................



Template SS confidence 















































































   120.........130.........140.........150.........160.........170.... .....180..
 
   180.........190.........200........ .210.........220.........230.........240.........250 ...
Predicted Secondary structure 





..

















....

Query SS confidence 




























. .









































. . . .


Query Sequence  VELEAPQLPRSLDDAQIALAVINTTYASQ. . IGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAY. . . . QSD
Query Conservation             
  
 


          ..         
                      
  
 
    .... 
 
Alig confidence 




























..



























..











....


Template Conservation     
    
  
  



  
         
                          
 ..   
   

  
  
   
Template Sequence  QYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVXPAGYEGESFAVGARKV. . DKTLIKKINQGFETLYKNG
Template Known Secondary structure  SSTS
STT
GGG
SS




TT..
T
Template Predicted Secondary structure 























..


Template SS confidence 















































































   183......190.........200.........210.........220.........230.........240. ........250.........260
 
   254.....260.........270.
Predicted Secondary structure 








Query SS confidence 

















Query Sequence  EVYEAANKVFNGGAVKGW
Query Conservation 
    
   
        
Alig confidence 

















Template Conservation      
  

 
 
     
Template Sequence  EFQKISNKWFGEDVATDQ
Template Known Secondary structure  SS



TT
Template Predicted Secondary structure 





Template SS confidence 

















   261........270........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions