Job Description P28635 Confidence 98.25% Date Thu Jan 5 11:45:06 GMT 2012 Rank 80 Aligned Residues 201 % Identity 12% Template c3fxbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha Resolution 2.90 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																					.	.	.																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	.	.	.	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	.	.	.	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																			.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	W	R	Y	A	F	E	E	A	M	T	D	V	Q	G	V	Y	A	Q	K	F	K	E	E	I	E	A	N	S	D	H	E	I	Q	L	F	P	Y	G	T	L	G	E	S	A	D	I	M	E	Q	T	Q	D	G	I	L	Q	F	V	D	Q	S	P	G	F	T	G	S	L	I	P	E	A	Q	V	F	F	V	P
Template Known Secondary structure									S	S		S	S	S																S	S	S								T	T	S	S		S											T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																												95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	K	D	R	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.
Template Conservation																																																.														.
Template Sequence		Y	L	L	P	T	D	Q	D	H	L	A	R	F	F	K	E	S	K	A	I	N	D	M	F	K	P	L	Y	A	D	Q	G	L	E	L	L	N	M	F	P	E	G	E	V	A	M	.	T	T	K	T	P	V	T	T	C	S	D	L	D	.	E	V	K	F	R	V	M	T	N	P	L	L	V	E	S	Y	K	A	F
Template Known Secondary structure		T		S		S																	T	T	S						T	T	T															.			S	S			S	S	G	G	G	S	T	.	T							S
Template Predicted Secondary structure																																																.														.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	T	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	N	V	I	Q	G	Q	E	N	P	T	F	F	L	Y	S	T	K	I	Y	E	V	T	D	Y	I	T	.	Y	A	G	H	N	N	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S							G	G	G							T	T	S														T	T	G	G	G	S						.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
																													159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210
		229	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		N	L	I	V	T	R	E	D	.	.	.	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F
Query Conservation										.	.	.
Alig confidence										.	.	.															.	.
Template Conservation																											.	.
Template Sequence		T	A	V	M	A	N	K	D	F	Y	D	G	L	S	A	E	D	Q	Q	L	V	Q	N	A	A	.	.	L	A	A	Y	D	H	T	V	V	Y	Q
Template Known Secondary structure														S													.	.
Template Predicted Secondary structure																											.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions