Job Description P28635 Confidence 98.20% Date Thu Jan 5 11:45:06 GMT 2012 Rank 82 Aligned Residues 203 % Identity 12% Template c3delC_ PDB info PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis Resolution 1.92 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	I	K	V	G	V	I	V	G	A	E	Q	.	.	.	.	.	.	.	.	.	.	.	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R
Query Conservation															.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																								.																			.	.
Template Conservation																																																	.																			.	.
Template Sequence		E	K	F	I	V	G	T	N	A	T	Y	P	P	F	E	F	V	D	K	R	G	E	V	V	G	F	D	I	D	L	A	R	E	I	S	N	K	L	G	K	T	L	D	V	R	E	F	.	S	F	D	A	L	I	L	N	L	K	Q	H	R	I	D	A	V	I	.	.	T	G	M	S	I	T	P	S	R	L	K	E
Template Known Secondary structure										S		B	T	T	T	B				T	T	S				S														T									.		G	G	G							T	T	S	S	S				.	.	S	S	B	B							T	T
Template Predicted Secondary structure																																																	.																			.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	M	I	P	Y	Y	G	E	E	I	K	H	L	V	L	V	F	K	G	E	N	K	H	P	L	P	L	T	Q	Y	R	S	V	A	V	Q	T	G	T	Y	Q	E	A	Y	L	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	E	V	H	I	R
Template Known Secondary structure		S											S								S			S					G	G	G	S	S						T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																										.	160	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.
Predicted Secondary structure																																						.	.	.																																				.	.	.	.
Query SS confidence																																						.	.	.																																				.	.	.	.
Query Sequence		V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	.	.	.	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	.	.	.	.	Q	S
Query Conservation																																						.	.	.																																				.	.	.	.
Alig confidence																																						.	.	.																						.	.													.	.	.	.
Template Conservation																																																														.	.
Template Sequence		S	F	D	S	T	L	E	V	L	M	E	V	M	H	G	K	S	P	V	A	V	L	E	P	S	I	A	Q	V	V	L	K	D	F	P	A	L	S	T	A	T	I	D	L	P	E	D	Q	W	V	L	G	Y	G	I	G	V	A	S	D	.	.	R	P	A	L	A	L	K	I	E	A	A	V	Q	E	I	R	K	E
Template Known Secondary structure				S	S										T	T	S	S	S													G	G	G		T	T										G	G	G											T	T	.	.																		T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		253	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	V	Y	E	A	A	N	K	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	L	A	E	L	E	Q	K	W	G
Template Known Secondary structure		T										T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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