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Job DescriptionP28635
Confidence98.48%DateThu Jan 5 11:45:06 GMT 2012
Rank62Aligned Residues232
% Identity15%Templatec3cg1A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PNHIKVGVIVGAEQQVAEVAQKVAKDKYG. . . . . . LDVELVTFNDYVLPNEALSKGD. IDANAFQHKPYLDQQLKDRGYK
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Template Sequence  EVTLIV. FHAGSLSVPFQEVEKEFSEYAERNLGIKVSFQDEASGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTD
Template Known Secondary structure 
.GGGS


TS



SSSTTTTTTT
S
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   32..... ..40.........50.........60.........70.........80.........90.........100.........110
 
   103......110.........120.. .......130.........140...... ...150......
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Query Sequence  LVAVGNTFVYPIAGYSKKIK. . . . . . . . . . . . SLDELQDGSQVAVPNDPTNLGRSL. . . . . . . . . . . . . . LLLQKVGLIK
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Template Conservation                                                
                                 
Template Sequence  FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEILAREDVRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEENT
Template Known Secondary structure 




TTSTT
GGGTSTT


TTT
TS
TTTTB
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   111........120.........130.........140.........150.........160.........170.........180.........190
 
   157..160.........170.........180.........190.........200.........210.........220
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Query Sequence  LKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFV. . . . . . . . . . . . . . . .
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Template Sequence  NIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQISI
Template Known Secondary structure  S
TT
SS

B
TTTSSGGGGTSSSTT


TTTSS

GGGTT
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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   221........230.........240.........250.........260..
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Query Sequence  . . . . . . . EDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKV
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Template Sequence  TLGSTGKTIKAKPIVYGVTVLKDAPNREVAIEFLRYLLSENGKRIFEKN
Template Known Secondary structure  TTT






TT
TTST
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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