Job Description P28635 Confidence 99.10% Date Thu Jan 5 11:45:06 GMT 2012 Rank 35 Aligned Residues 233 % Identity 11% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																								.																					.	.	.	.	.
Query SS confidence																																								.																					.	.	.	.	.
Query Sequence		L	V	G	C	G	Q	D	E	K	D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	.	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	.	.	.	.	.	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D
Query Conservation																																								.																					.	.	.	.	.
Alig confidence													.					.	.																					.																					.	.	.	.	.
Template Conservation													.					.	.
Template Sequence		F	P	A	L	S	G	K	T	D	A	Q	.	T	L	V	V	.	.	Y	S	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M	D	L	Q	V
Template Known Secondary structure					T	T			T	T			.					.	.				S																	T	T																							T	T			B		S					S
Template Predicted Secondary structure													.					.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.		.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		94	.	.	.	.	.																									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	L	K	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	.	.	.	.	.	.	.	.	.	.	D	G	S	Q	V	A	V	P	N	D	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H	G	R	I	A	T	Y	D	I	E	R
Template Known Secondary structure						T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T					T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	.	.	.	.	.	.	.	.	.	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	T	T											T	T					S											T	T	S		S															T	T		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.										.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		V	E	D	K	E	S	P	Y	V	N	L	.	.	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		V	L	P	K	D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q
Template Known Secondary structure					S	S													T	T	B	S	S													S											S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions