Job Description P28635 Confidence 97.34% Date Thu Jan 5 11:45:06 GMT 2012 Rank 129 Aligned Residues 240 % Identity 16% Template c2zykA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																		.	.	.													.																				.	.	.
Query SS confidence									.	.																																		.	.	.													.																				.	.	.
Query Sequence		D	P	N	H	I	K	V	.	.	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	.	.	.	Y	V	L	P	N	E	A	L	S	K	G	D	.	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.
Query Conservation									.	.																																		.	.	.													.																				.	.	.
Alig confidence									.	.																																		.	.	.													.																				.	.	.
Template Conservation
Template Sequence		K	P	D	K	L	V	V	W	E	N	A	D	D	G	V	Q	L	N	N	T	K	K	W	A	G	E	F	T	K	K	T	G	I	Q	V	E	V	V	P	V	A	L	L	K	Q	Q	E	K	L	T	L	D	G	P	A	G	K	G	A	D	L	V	T	W	P	H	D	R	L	G	E	A	V	T	K	G	L	L	Q	P
Template Known Secondary structure														S	S																												T	T	T									G	G	G	T		S		S						G	G	G	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
																												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	.	.	.	.	.	.	.	.	.	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	V	D	N	S	V	K	N	Q	F	D	D	V	A	M	K	A	L	T	Y	G	G	K	L	Y	G	L	P	K	A	I	E	S	V	A	L	I	Y	N	K	K	L	M	G	Q	V	P	A	T	Y	D	E	L	F	Q	Y	A	K	A	N	N	K	P	D	E	Q	K	Y	G	V	L	F	E	A	N	N	F	Y	Y
Template Known Secondary structure											T	B								T			T	T																		T	T	T		S	S			S	B													B	T	T	T	T	B							T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	F	L	F	A	A	K	G	A	A	V	F	K	E	Q	D	G	T	L	D	P	N	E	I	G	L	N	S	P	E	A	V	Q	G	M	N	E	V	Q	K	W	F	T	E	A	R	L	P	Q	S	L	K	A	D	T	V	N	G	L	F	K	S	G	K	V	A	A	V	I	N	G	P	W	A	I	K	D	Y	Q
Template Known Secondary structure							T	T	T	T			S				S	S	S	S								T	T	S																T	S				T	T												T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		L	T	P	A	K	D	G	I	F	V	.	.	.	.	.	.	.	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G	G	A	V
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	G	I	N	V	G	V	A	P	L	P	K	I	D	G	K	D	A	Q	T	F	I	G	V	K	G	W	Y	L	S	A	Y	S	K	Y	P	K	Y	A	T	E	L	M	Q	F	L	T	S	K	E	A	L	A	S	R	F	K	E	T	G	E	I	P	P
Template Known Secondary structure			T	T										B	S	S	S	S															T	T		S														S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions