Job Description P28635 Confidence 97.54% Date Thu Jan 5 11:45:06 GMT 2012 Rank 120 Aligned Residues 233 % Identity 18% Template c2xd3A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. Resolution 2.00 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.													.																			.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.													.																			.	.	.	.	.	.	.	.
Query Sequence		H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	.	.	.	V	L	P	N	E	A	L	S	K	G	D	I	.	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.													.																			.	.	.	.	.	.	.	.
Alig confidence						.																																		.	.	.													.																			.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		E	L	T	V	.	Y	V	D	E	G	Y	K	S	Y	I	E	E	V	A	K	A	Y	E	K	E	A	G	V	K	V	T	L	K	T	G	D	A	L	G	G	L	D	K	L	S	L	D	N	Q	N	G	N	V	P	D	V	M	M	A	P	Y	D	R	V	G	S	L	G	S	D	G	Q	L	S	E	V	K	L	S	D
Template Known Secondary structure						.				G	G	G															S	S																T								S				S															T	T		B							G
Template Predicted Secondary structure						.
Template SS confidence
		42	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
																						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	K	T	D	D	T	T	K	S	L	V	T	A	A	N	G	K	V	Y	G	A	P	A	V	I	E	S	L	V	M	Y	Y	N	K	D	L	V	K	D	A	P	K	T	F	A	D	L	E	N	L	A	K	D	S	K	Y	A	F	A	G	E	D	G	K	T	T	A	F	L	A	D	W	T	N	F	Y	Y	T	Y
Template Known Secondary structure		G	G											B		T	T			B																T	T	T		S	S				B										S	G	G	G	B		T	T	S	T	T		B		S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	L	A	G	N	G	A	Y	V	F	G	Q	N	G	K	D	A	K	D	I	G	L	A	N	D	G	S	I	V	G	I	N	Y	A	K	S	W	Y	E	K	W	P	K	G	M	Q	D	T	E	G	A	G	N	L	I	Q	T	Q	F	Q	E	G	K	T	A	A	I	I	D	G	P	W	K	A	Q	A	F	K	D
Template Known Secondary structure							T	T									T							T	T	S															T	T	S		G	G	G	G		S	S												T	T			S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		212	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		T	P	A	K	D	G	I	F	V	E	.	.	.	.	.	.	.	.	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N	G
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	V	N	Y	G	V	A	T	I	P	T	L	P	N	G	K	E	Y	A	A	F	G	G	G	K	A	W	V	I	P	Q	A	V	K	N	L	E	A	S	Q	K	F	V	D	F	L	V	A	T	E	Q	Q	K	V	L	Y	D	K	T	N	E
Template Known Secondary structure		T	T										B		T	T	S															B	T	T		S														S
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions