Job Description P28635 Confidence 98.65% Date Thu Jan 5 11:45:06 GMT 2012 Rank 48 Aligned Residues 231 % Identity 10% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	.	.	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.																			.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																				.	.																			.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		D	V	L	Y	L	Y	N	W	T	Y	Y	T	P	.	.	.	T	S	L	I	K	K	F	E	Q	Q	Y	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D	L	S	K	I
Template Known Secondary structure										T	T	T	S		.	.	.												T									S										S	S	S			S		S					B										T	T							G	G	G
Template Predicted Secondary structure															.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	.	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		P	N	V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	S	R	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S	L	G	Y	N	V
Template Known Secondary structure		G	G	G	G	G	B									T	T	S	T	T		S	S															T	T	T			S			S	S	G	G	G	G	G		G	G	G	T	T	S					S													T	T			T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	.	.	.	.	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	I	V
Query Conservation																																																					.	.	.	.
Alig confidence																																																					.	.	.	.
Template Conservation
Template Sequence		N	T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	P	V	Y	V	D	S	F	C
Template Known Secondary structure		T																		T	G	G	G						S	S	S								T	S		S													S		G	G	G	G	G	G							T	T	T	T									B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G
Template Known Secondary structure				T	T		S													T	S												T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions