Job Description P28635 Confidence 98.31% Date Thu Jan 5 11:45:06 GMT 2012 Rank 77 Aligned Residues 201 % Identity 16% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																				.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																				.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	.	.	.	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	.	.	.	.	.	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.																				.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																				.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	W	D	L	P	T	A	Y	P	A	S	N	L	H	V	E	N	L	T	Q	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D	G
Template Known Secondary structure									S	S		T	T	S																		T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.												.						.	.	.	.	.
Template Conservation																																																.												.						.	.	.	.	.
Template Sequence		L	P	F	L	A	T	G	Y	D	A	S	F	K	L	Y	Q	A	Q	K	P	F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	.	N	R	D	I	K	Q	V	S	D	M	K	.	G	L	K	W	R	.	.	.	.	.	A	Y	S	P	V	T	A	K	I	A	E
Template Known Secondary structure		S	T	T	S			S																					T	T	T																	.	S	S			S	S	G	G	G	G	T	.	T					.	.	.	.	.		S	S
Template Predicted Secondary structure																																																.												.						.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	P	V	T	V	Q	Q	A	E	L	A	Q	A	M	A	T	G	V	I	D	S	Y	M	S	S	G	S	T	G	F	D	T	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	P	K	N	A	V
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G							T	T	S		S												T	T	G	G	G	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.																								.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		231	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		I	V	T	R	E	D	.	.	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F
Query Conservation								.	.
Alig confidence								.	.															.	.
Template Conservation																								.	.
Template Sequence		L	V	N	K	K	A	F	D	A	L	D	P	A	T	Q	Q	A	L	K	K	A	G	.	.	A	Q	A	E	E	R	G	W	K	L	S
Template Known Secondary structure										T	S													.	.
Template Predicted Secondary structure																								.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions