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Job DescriptionP28635
Confidence98.16%DateThu Jan 5 11:45:06 GMT 2012
Rank85Aligned Residues212
% Identity15%Templatec2ieeB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574.
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40... ......50.........60.........70.........80.........90.........100
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Query Sequence  NHIKVGVIVGAEQ. . . . . . . . . . QVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRG
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Template Sequence  GKIVVATSGTLYPTSYHDTDKLTGYEVEVVREAAKRLGLKVEFKEXGIDGXLTA. VNSGQVDAAANDIDVTKDREEKFAF
Template Known Secondary structure  T
S
BTTTB

STTT


STT.TTSSS
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B

TT
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   21........30.........40.........50.........60.........70.... .....80.........90.........
 
   101........110.........120.........130.........140.........150.........160.........170.........180
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Query Sequence  YKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIV
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Template Sequence  STPYKYSYGTAIVRKDDLSGIKTLKDLK. GKKAAGATTVYXEVARKY. . . . . . . . . . . . . . . . . . . . . . . . . GAKEVIYD
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S
TTTGGG
SSGGGGT.T



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   104.....110.........120.........130. ........140......... 150.......
 
   181........190.........200.........210.........220.........230.........240.........250 ......
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Query Sequence  ELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAY. . . . QSDEVY
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Template Sequence  NATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYXPNKQALVXKKSNAALQKKXNEALKEXSKDGSLT
Template Known Secondary structure  S

TTS


TTSS

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   159160.........170.........180.........190.........200.........210.........220.........230........
 
   257..260.........
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Query Sequence  EAANKVFNGGAVK
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Template Sequence  KLSKQFFNKADVS
Template Known Secondary structure  TTT

TT
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   239240.........250.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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