Job Description P28635 Confidence 99.84% Date Thu Jan 5 11:45:06 GMT 2012 Rank 19 Aligned Residues 214 % Identity 14% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.
Predicted Secondary structure																							.												.																					.	.	.	.																	.	.	.	.
Query SS confidence																							.												.																					.	.	.	.																	.	.	.	.
Query Sequence		D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	.	Q	K	V	A	K	D	K	Y	G	L	D	.	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	.	.	.	.	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	.	.	.	.	K	D
Query Conservation																							.												.																					.	.	.	.																	.	.	.	.
Alig confidence																							.												.																					.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I	T	N	G
Template Known Secondary structure		S		S								S	S	G	G	G									T	T					T	T		T								S	S												T	T	T	T	S		S						T	T							T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																		.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		R	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	S	L	D	E	L	Q	D	G	S	.	.	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V	D	P	D	T	D
Template Known Secondary structure														B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S													T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.														.
Query SS confidence																																																																		.	.														.
Query Sequence		G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	.	.	E	S	P	Y	V	N	L	I	V	T	R	E	D	.
Query Conservation																																																																		.	.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
			237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K
Query Conservation		.
Alig confidence		.															.	.
Template Conservation																	.	.
Template Sequence		V	D	K	N	P	K	A	T	K	A	L	L	K	G	I	.	.	M	E	A	Q	Q	W	I	D	D
Template Known Secondary structure																	.	.									S
Template Predicted Secondary structure																	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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