Job Description P28635 Confidence 96.73% Date Thu Jan 5 11:45:06 GMT 2012 Rank 152 Aligned Residues 233 % Identity 14% Template c2gh9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose Resolution 1.95 Å

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		32	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																																			.	.	.												.																				.	.	.	.	.	.	.
Query SS confidence						.																																			.	.	.												.																				.	.	.	.	.	.	.
Query Sequence		H	I	K	V	.	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	.	.	.	V	L	P	N	E	A	L	S	K	G	D	.	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	.	.	.	.	.	.	.
Query Conservation						.																																			.	.	.												.																				.	.	.	.	.	.	.
Alig confidence						.																																			.	.	.												.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	T	V	W	T	H	F	G	G	P	E	L	E	W	L	K	E	Q	A	R	T	F	E	R	T	S	G	T	K	V	E	V	V	E	V	P	F	A	E	I	K	Q	K	F	I	L	G	A	P	Q	G	Q	A	A	D	L	V	V	T	V	P	H	D	W	V	G	E	M	A	Q	A	G	V	L	E	P	V	G	K
Template Known Secondary structure																											T	T	S																					G	G	G	T		S		S							G	G	G							T	T		B				G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	.	.	.	.	.	.	.	.	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	T	Q	A	Y	L	A	D	L	Q	G	V	A	V	E	A	F	T	F	G	G	R	L	M	G	L	P	A	F	A	E	S	V	A	L	I	Y	N	K	K	Y	V	K	E	P	P	R	T	W	E	E	F	L	A	L	A	Q	K	L	T	T	G	A	T	F	G	F	L	Y	N	I	G	D	P	Y	F	N	F	G
Template Known Secondary structure		G	S								B								T			T	T				S														T	T	T		S	S			S	S													S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	K	A	F	G	A	E	N	V	F	A	K	D	A	K	G	N	L	D	P	T	K	L	L	I	G	G	E	V	G	E	K	A	L	Q	F	I	K	D	L	R	F	K	Y	N	L	V	P	E	G	V	D	Y	G	V	A	D	G	A	F	K	D	G	A	L	A	M	I	L	N	G	P	W	A	L	G	D	Y	K
Template Known Secondary structure							T		S	S	S					T	T	T								S	S	S																	T	S			S		T	T													T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		211	.	.	.	.	.	.	.	.	220										.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		L	T	P	A	K	D	G	I	F	V	.	.	.	.	.	.	.	.	.	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N	K	V	F	N
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	K	V	D	F	G	I	A	P	F	P	V	P	P	G	A	K	N	P	W	G	P	F	L	G	V	Q	G	V	V	V	N	A	Y	S	K	N	K	T	Q	A	V	N	F	A	K	T	L	V	T	G	R	N	L	V	A	F	N	Q	A	G	G
Template Known Secondary structure			T	T												T	T		S	S														B	T	T		T	T												T	S											S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions