Job Description P28635 Confidence 99.87% Date Thu Jan 5 11:45:06 GMT 2012 Rank 15 Aligned Residues 216 % Identity 15% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																										.											.																			.	.	.	.																				.	.	.
Query SS confidence																										.											.																			.	.	.	.																				.	.	.
Query Sequence		D	E	K	D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	.	Q	K	V	A	K	D	K	Y	G	L	.	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	.	.	.	.	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	.	.	.
Query Conservation																										.											.																			.	.	.	.																				.	.	.
Alig confidence																										.											.																			.	.	.	.																				.	.	.
Template Conservation
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V
Template Known Secondary structure					S		S								S	S	G	G	G									T	T					T	T		T	T							S													G	G	G	T	S		S						T										T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
			97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.														.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		.	K	D	R	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	.	L	L	Q	K	V	G	L	I	K	L	K	D	G	V
Query Conservation		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.													.	.
Template Conservation																																																																																.	.
Template Sequence		T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	.	.
Template Known Secondary structure		S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S													T	T			B	T	T	T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.			.
Predicted Secondary structure																																																																					.	.									.	.
Query SS confidence																																																																					.	.									.	.
Query Sequence		G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L	K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	.	.	N	L	I	V	T	R	E	D	.	.	N
Query Conservation																																																																					.	.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B							G	G	G							T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	A	E	N	V	K	K	F	V	Q	A	Y	Q	S	D	E	V	Y	E	A	A	N
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		Q	N	P	K	A	A	K	A	L	L	M	A	V	M	.	.	E	A	Q	Q	W	C	D
Template Known Secondary structure																.	.
Template Predicted Secondary structure																.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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