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Job DescriptionP28635
Confidence84.28%DateThu Jan 5 11:45:06 GMT 2012
Rank192Aligned Residues199
% Identity11%Templatec2f78A_
PDB info PDB header:gene regulationChain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  HIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFV
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Template Sequence  TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKRTLLRNERLMVAVHA
Template Known Secondary structure 
GGGGGTT
TT

TS
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TTT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  YPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSL
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Template Sequence  SHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP. . . . . . . . . . . . . . . . TKINEVREVQLALGLV
Template Known Secondary structure  TSGGGGGTTT
B
GGGSTTS



SSSSSTTT


................SS
SS
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   171........180.........190.........200.........210........ .220.........230....
 
   192.......200.........210.........220.........230.........240.........250
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Query Sequence  DDAQIALAVINTTYASQIGLTPAKDGIFVEDKESPYVNLIVTREDNKDAENVKKFVQAY
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Template Sequence  AAGEGISLV. . . PASTQSIQLFNLSYVPLLDPDAITPIYIAVRNM. EESTYIYSLYETI
Template Known Secondary structure  TS
B...GGGGG


TTB

TT
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   235....240... ......250.........260.........270...... ...280.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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