Job Description P28635 Confidence 97.65% Date Thu Jan 5 11:45:06 GMT 2012 Rank 113 Aligned Residues 211 % Identity 13% Template c1xt8B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative amino-acid transporter periplasmic solute-binding PDBTitle: crystal structure of cysteine-binding protein from campylobacter2 jejuni at 2.0 a resolution Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		N	H	I	K	V	G	V	I	V	.	.	.	.	.	.	.	.	.	.	.	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	.	.	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																													.	.																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	V	V	R	I	G	V	F	G	D	K	P	P	F	G	Y	V	D	E	K	G	N	N	Q	G	Y	D	I	A	L	A	K	R	I	A	K	E	L	F	G	D	E	N	K	V	Q	F	V	L	V	E	A	A	N	R	V	E	F	L	K	S	N	K	V	D	I	I	L	A	N	F	T	Q	T	P	Q	R	.	.	.
Template Known Secondary structure		S	S							S			T	T	T					T	T	S				S															S		T	T									G	G	G							T	T	S		S				S	S		B						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	G	Y	K	L	V	A	V	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	Q	K	V	G	L	I	K	L	K	D	G	V	G	L	L	P	T	V	L	D	V	V	E	N	P	K	N	L
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	Q	V	D	F	C	S	P	Y	M	K	V	A	L	G	V	A	V	P	K	D	S	N	I	T	S	V	E	D	L	K	D	K	T	L	L	L	N	K	G	T	T	A	D	A	Y	F	T	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	N	I	K
Template Known Secondary structure			T	T																		T	T					S	G	G	G	G	T	T	S						T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																									.	.	150	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		K	I	V	E	L	E	A	P	Q	L	P	R	S	L	D	D	A	Q	I	A	L	A	V	I	N	T	T	Y	A	S	Q	I	G	L	T	P	A	K	D	G	I	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	T	R	E	D	N	K	D	A	E	N	V	K	K	F	V	Q	A	Y	.	.	.	.	Q	S	D
Query Conservation																																																																											.	.	.	.
Alig confidence																																																													.	.													.	.	.	.
Template Conservation																																																													.	.
Template Sequence		T	L	K	Y	D	Q	N	T	E	T	F	A	A	L	M	D	K	R	G	D	A	L	S	H	D	N	T	L	L	F	A	W	V	K	D	H	P	D	F	K	M	G	I	K	E	L	G	N	K	D	V	I	A	P	A	V	K	K	G	.	.	D	K	E	L	K	E	F	I	D	N	L	I	I	K	L	G	Q	E	Q
Template Known Secondary structure						S	S										T	T	S	S	S																	T	T																				T	T	.	.																	T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		254	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		E	V	Y	E	A	A	N	K	V	F	N	.	.	.	G	G	A	V	K	G
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		F	F	H	K	A	Y	D	E	T	L	K	A	H	F	G	D	D	V	K	A
Template Known Secondary structure											T	G	G	G	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions