Job Description P28635 Confidence 81.19% Date Thu Jan 5 11:45:06 GMT 2012 Rank 195 Aligned Residues 120 % Identity 14% Template c1lfgA_ PDB info PDB header:transferrin Chain: A: PDB Molecule:lactoferrin; PDBTitle: molecular replacement solution of the structure of apolactoferrin, a2 protein displaying large-scale conformational change Resolution 2.20 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	D	P	N	H	I	K	V	G	V	I	V	G	A	E	Q	Q	V	A	E	V	A	Q	K	V	A	K	D	K	Y	G	L	D	V	E	L	V	T	F	N	D	Y	V	L	P	N	E	A	L	S	K	G	D	I	D	A	N	A	F	Q	H	K	P	Y	L	D	Q	Q	L	K	D	R	G	Y	K	L	V	A	V	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		G	R	R	R	S	V	Q	W	C	A	V	S	N	P	E	A	T	K	C	F	Q	W	Q	R	N	M	R	K	V	R	G	P	P	V	S	C	I	K	R	D	S	P	I	Q	C	I	Q	A	I	A	E	N	R	A	D	A	V	T	L	D	G	G	F	I	Y	E	A	G	L	A	P	Y	K	L	R	P	V	A	A	E
Template Known Secondary structure												S	S																	T	T										S	S										T	T	S			B													S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
										107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	N	T	F	V	Y	P	I	A	G	Y	S	K	K	I	K	S	L	D	E	L	Q	D	G	S	Q	V	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																							.
Template Conservation																																.
Template Sequence		V	Y	G	T	E	R	Q	P	R	T	H	Y	Y	A	V	A	V	V	K	K	G	G	S	F	Q	L	N	E	L	Q	.	G	L	K	S	C	H	T	G	L	R	R	T	A	G	W	N	V	P	I
Template Known Secondary structure						T	T				S										T	T					T	T			T	.	T	S					S		T	T		T	T	T	T
Template Predicted Secondary structure																																.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions