Job Description P24218 Confidence 98.86% Date Thu Jan 5 11:41:20 GMT 2012 Rank 21 Aligned Residues 106 % Identity 15% Template c2kkpA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). Resolution UNK

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.														.
Query SS confidence																					.	.	.	.														.
Query Sequence		D	L	P	D	V	T	F	E	E	A	C	L	R	W	L	E	E	K	A	.	.	.	.	D	K	K	S	L	D	S	D	K	S	R	I	E	.	F	W	L	E	H	F	E	G	I	R	L	K	D	I	S	E	A	K	I	Y	S	A	V	S	R	M	H	N	R	K	T	K	E	I	W	K	Q	K	V	Q	A	A	I
Query Conservation																					.	.	.	.														.
Alig confidence																					.	.	.	.														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	S	K	I	T	V	E	Q	W	L	N	R	W	L	T	D	Y	A	K	P	H	L	R	Q	S	T	W	E	S	Y	E	T	V	L	R	L	H	V	I	P	T	L	G	S	I	P	L	K	K	L	Q	P	A	D	I	Q	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S			S														T	S				S					S																T	S		T	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	G	K	E	L	P	V	Y	E	P	K	P	V	S	T	Q	T	K	A	K	H	L	A	M	I	K	A	I	L	R	A	A	E	R	D	W	K	W	L	E	K	A	P	V	I	K	I	P	A	V	R	N	K	R	V	R
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	Y	A	S	K	L	E	S	G	L	S	P	T	R	V	R	Y	I	H	V	V	L	H	E	A	M	S	Q	A	R	E	S	G	L	L	L	Q	N	P	T	E	A	A	K	P	P	R	H	P	L	E	H	H
Template Known Secondary structure		.	.	.	.	.							T	T																						T	T	T	S		S	S		G	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions