Job Description P24218 Confidence 43.05% Date Thu Jan 5 11:41:20 GMT 2012 Rank 44 Aligned Residues 129 % Identity 16% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.												.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence		L	K	S	V	V	K	F	A	L	A	T	G	L	R	K	S	.	.	.	.	.	.	.	.	.	.	.	N	I	I	N	L	E	W	Q	Q	I	D	M	Q	R	R	V	A	W	V	N	P	E	E	S	K	S	N	R	A	I	G	V	A	.	L	N	D	T	A	C	K	V	L	R	D	Q	I	G	K	H	H	K	W
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence		L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P	E
Template Known Secondary structure																														S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																				330
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	V	H	T	K	A	A	K	R	A	D	G	T	S	T	P	A	V	R	K	M	R	I	D	S	K	T	S	W	L	S	A	C	R	R	A	G	I	E	D	F	R	F	H	D	L	R	H	T	W	A	S	W	L	I	Q	S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		E	F	L	F	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T
Template Known Secondary structure		S	B	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.											G	G	G	.	.	.	.	.	.	.	T																										S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.															.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	L	Q	E	M	G	G	W	E	S	I	E	M	V	R	R	Y	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	Q	T	A	E	V	V	G	H	T	P	S	I	S	K	R	A	M	A	T
Template Known Secondary structure										T	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions