Job Description P24218 Confidence 99.96% Date Thu Jan 5 11:41:20 GMT 2012 Rank 3 Aligned Residues 268 % Identity 17% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		F	E	E	A	C	L	R	W	L	E	E	K	A	.	D	K	K	S	L	D	S	D	K	S	R	I	E	F	W	L	E	H	F	E	G	I	R	L	K	D	I	S	E	A	K	I	Y	S	A	V	S	R	M	H	N	R	K	T	K	E	I	W	K	Q	K	V	Q	A	A	I	R	K	G	K	E	L	P	V	Y	E
Query Conservation															.
Alig confidence															.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	L	S	V	R	E	F	M	Q	T	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	R	Y	I	H	F	H	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	A	V	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T																		T	T	S	S	S			G	G	G															T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	P	V	S	T	Q	T	K	A	K	H	L	A	M	I	K	A	I	L	R	A	A	E	R	D	W	K	W	L	E	K	A	P	V	I	K	I	P	A	V	R	N	K	R	V	R	W	L	E	K	E	E	A	K	R	L	I	D	E	C	P	E	P	L	K	S	V	V	K	F	A	L	A	T	G	L	R	K	S
Query Conservation
Alig confidence		.	.																																					.	.
Template Conservation		.	.																																					.	.
Template Sequence		.	.	K	V	A	T	K	T	Q	S	L	A	L	N	S	L	S	F	L	Y	K	E	I	L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	.	.	L	E	R	K	L	P	V	V	L	T	R	D	E	I	R	R	L	L	E	I	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L	R	L	M
Template Known Secondary structure		.	.																					T	S	S					T	T								.	.																		T	T	S	S														S
Template Predicted Secondary structure		.	.																																					.	.
Template SS confidence
				62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.																																.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	I	N	L	E	W	Q	Q	I	D	M	Q	R	R	V	A	W	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	E	S	K	S	N	R	A	I	G	V	A	L	N	D	T	A	C	K	V	L	R	D	Q	I	G	K	H
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	C	M	R	L	R	V	Q	D	I	D	F	D	Y	G	A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P	Y	E	F
Template Known Secondary structure					T		B	G	G	G			T	T	T	T								T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G	G		G
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		267	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure				.																																										.
Query SS confidence				.																																										.
Query Sequence		H	K	.	W	V	F	V	H	T	K	A	A	K	R	A	D	G	T	S	T	P	A	V	R	K	M	R	I	D	S	K	T	S	W	L	S	A	C	R	R	A	G	I	E	.	D	F	R	F	H	D	L	R	H	T	W	A	S	W	L	I	Q	S	G	V	P	L	S	V	L	Q	E	M	G	G	W	E	S	I	E
Query Conservation				.																																										.
Alig confidence				.																																										.
Template Conservation
Template Sequence		R	W	H	Y	L	F	P	S	F	Q	L	S	L	D	P	E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K
Template Known Secondary structure		G	G	S	B	S	S	B		S	S					T	T	T	T						B																T	T				S																		T	T											T		S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	R	R	Y	A	H	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	Q	I	Y	T	H	S	G
Template Known Secondary structure				G	G	G
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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